R: Characterise Tables of an OMOP Common Data Model Instance

# Characterise Tables of an OMOP Common Data Model Instance

## Documentation for package ‘OmopSketch’ version 1.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

clinicalTables | Tables in the cdm_reference that contain clinical information
databaseCharacteristics | Summarise Database Characteristics for OMOP CDM
mockOmopSketch | Creates a mock database to test OmopSketch package
plotConceptSetCounts | Plot the concept counts of a summariseConceptSetCounts output
plotInObservation | Create a ggplot2 plot from the output of summariseInObservation()
plotObservationPeriod | Create a plot from the output of summariseObservationPeriod()
plotPerson | Visualise the output of 'summarisePerson()'
plotRecordCount | Create a ggplot of the records' count trend
plotTrend | Create a ggplot2 plot from the output of summariseTrend()
shinyCharacteristics | Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' function
summariseClinicalRecords | Summarise an omop table from a cdm object
summariseConceptCounts | Summarise concept counts in patient-level data
summariseConceptIdCounts | Summarise concept use in patient-level data
summariseConceptSetCounts | Summarise concept counts in patient-level data
summariseInObservation | Summarise the number of people in observation during a specific interval of time
summariseMissingData | Summarise missing data in omop tables
summariseObservationPeriod | Summarise the observation period table getting some overall statistics in a summarised_result object
summariseOmopSnapshot | Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object
summarisePerson | Summarise person table
summariseRecordCount | Summarise record counts of an omop_table using a specific time interval
summariseTrend | Summarise temporal trends in OMOP tables
tableClinicalRecords | Create a visual table from a summariseClinicalRecord() output
tableConceptIdCounts | Create a visual table from a summariseConceptIdCounts() result
tableInObservation | Create a visual table from a summariseInObservation() result
tableMissingData | Create a visual table from a summariseMissingData() result
tableObservationPeriod | Create a visual table from a summariseObservationPeriod() result
tableOmopSnapshot | Create a visual table from a summarise_omop_snapshot result
tablePerson | Visualise the results of 'summarisePerson()' into a table
tableRecordCount | Create a visual table from a summariseRecordCount() result
tableTopConceptCounts | Create a visual table of the most common concepts from 'summariseConceptIdCounts()' output
tableTrend | Create a visual table from a summariseTrend() result