R: HMM Toolkit for Inferring IBD Segments from SNP Genotypes

# HMM Toolkit for Inferring IBD Segments from SNP Genotypes

## Documentation for package ‘ibdfindr’ version 0.4.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

brothersX | Dataset with X-chromosomal SNP genotypes for two brothers
computePR | Precision and Recall for IBD segment calls
cousinsDemo | Dataset with autosomal SNP genotypes for two cousins
findIBD | All-in-one workflow for finding IBD segments
findSegments | Identify IBD segments
fitHMM | Fit a Hidden Markov Model to genotype data
ibdPosteriors | IBD posteriors
plotIBD | Plot IBD segments and posteriors
problemMarkers | Identify problematic markers
totalLoglik | Total log-likelihood for observed data