Package: castgen
Title: Estimate Sample Size for Population Genomic Studies
Version: 1.0.2
Authors@R: 
    person("Alexander M.", "Sandercock", , "ams866@cornell.edu", role = c("aut", "cre"),
           comment = c(ORCID = "https://orcid.org/0000-0001-6897-1856"))
Description: Estimate sample sizes needed to capture target levels of
    genetic diversity from a population (multivariate allele frequencies)
    for applications like germplasm conservation and breeding efforts.
    Compares bootstrap samples to a full population using linear
    regression, employing the R-squared value to represent the proportion
    of diversity captured. Iteratively increases sample size until a
    user-defined target R-squared is met. Offers a parallelized R
    implementation of a previously developed 'python' method. All ploidy
    levels are supported. For more details, see Sandercock et al. (2024) <doi:10.1073/pnas.2403505121>.
License: Apache License (>= 2)
URL: https://github.com/alex-sandercock/castgen
BugReports: https://github.com/alex-sandercock/castgen/issues
Imports: doParallel (>= 1.0.17), dplyr (>= 1.1.2), foreach (>= 1.5.2),
        parallel (>= 4.0.0), Rdpack (>= 0.7), stats, utils, vcfR (>=
        1.15.0)
Suggests: testthat (>= 3.0.0)
Encoding: UTF-8
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-04-01 19:42:07 UTC; ams866
Author: Alexander M. Sandercock [aut, cre]
    (<https://orcid.org/0000-0001-6897-1856>)
Maintainer: Alexander M. Sandercock <ams866@cornell.edu>
Repository: CRAN
Date/Publication: 2025-04-02 17:40:05 UTC
Built: R 4.6.0; ; 2026-04-25 19:56:47 UTC; unix
