R: Nested Particle Filter for Stochastic SEIR Epidemic Models

# Nested Particle Filter for Stochastic SEIR Epidemic Models

## Documentation for package ‘npfseir’ version 0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

npfseir-package | npfseir: Nested Particle Filter for Stochastic SEIR Epidemic Models
cori_rt | Cori-style renewal-equation R_t estimator
npfseir | npfseir: Nested Particle Filter for Stochastic SEIR Epidemic Models
npf_seir | Run the Nested Particle Filter for a stochastic SEIR model
ou_params | Compute exact Ornstein-Uhlenbeck discrete-time transition parameters
plot.npf_seir | Plot method for npf_seir
predict.npf_seir | Posterior predictive forecasts from an npf_seir object
print.npf_seir | Print method for npf_seir
seir_simulate | Simulate a stochastic SEIR epidemic with latent OU transmission
summary.npf_seir | Summary method for npf_seir