Type: Package
Package: qtl2pleio
Title: Testing Pleiotropy in Multiparental Populations
Version: 1.4.3
Authors@R: 
    person(given = "Frederick J",
           family = "Boehm",
           role = c("aut", "cre"),
           email = "frederick.boehm@gmail.com",
           comment = c(ORCID = "0000-0002-1644-5931"))
Description: We implement an
    adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing
    the null hypothesis of pleiotropy against the alternative hypothesis,
    two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> 
    and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in
    that our test accommodates multiparental populations.
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
BugReports: https://github.com/fboehm/qtl2pleio/issues
Depends: R (>= 3.2)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble,
        parallel
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
        qtl2, parallelly
LinkingTo: Rcpp, RcppEigen
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: yes
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Packaged: 2020-12-01 21:53:16 UTC; fred
Author: Frederick J Boehm [aut, cre] (<https://orcid.org/0000-0002-1644-5931>)
Maintainer: Frederick J Boehm <frederick.boehm@gmail.com>
Repository: CRAN
Date/Publication: 2020-12-02 22:50:02 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-25 20:46:37 UTC; unix
Archs: qtl2pleio.so.dSYM
