Package: TiPS
Type: Package
Title: Trajectories and Phylogenies Simulator
Version: 1.1.1
Date: 2022-02-01
Authors@R: c(person("Gonche", "Danesh", role = c("aut", "cre", "cph"), email = "gonche.danesh@gmail.com"),
	     person("Emma", "Saulnier", role = c("aut", "cph")),
			 person("Olivier", "Gascuel", role = c("aut", "cph")),
	     person("Marc", "Choisy", role = c("aut", "cph", "ths")),
	     person("Samuel", "Alizon", role = c("aut", "cph", "ths")))
Maintainer: Gonche Danesh <gonche.danesh@gmail.com>
Description: Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2020) <doi:10.1101/2020.11.09.373795>.
License: GPL (>= 2)
SystemRequirements: C++11
Depends: R (>= 3.2.0)
Imports: graphics, grDevices, gtools, inline, methods, Rcpp (>=
        0.12.14), stats, stringr, utils
Suggests: knitr, rmarkdown, ape
LinkingTo: Rcpp
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2022-02-01 09:13:39 UTC; danech
RoxygenNote: 7.1.0
Encoding: UTF-8
BugReports: https://gitlab.in2p3.fr/ete/tips/-/issues
URL: https://gitlab.in2p3.fr/ete/tips/
Author: Gonche Danesh [aut, cre, cph],
  Emma Saulnier [aut, cph],
  Olivier Gascuel [aut, cph],
  Marc Choisy [aut, cph, ths],
  Samuel Alizon [aut, cph, ths]
Repository: CRAN
Date/Publication: 2022-02-01 16:50:02 UTC
Built: R 4.0.5; x86_64-w64-mingw32; 2022-04-21 04:56:38 UTC; windows
Archs: i386, x64
