Type: Package
Date: 2021-01-27
Package: kibior
Version: 0.1.1
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.1
URL: https://github.com/regisoc/kibior
BugReports: https://github.com/regisoc/kibior/issues
Title: A Simple Data Management and Sharing Tool
biocViews: DataImport, DataRepresentation, ThirdPartyClient
Authors@R: c(
    person(given = "Régis",
           family = "Ongaro-Carcy",
           role = c("aut", "cre", "ctb"),
           email = "regis.ongaro-carcy2@crchudequebec.ulaval.ca",
           comment = c(ORCID = "0000-0002-0091-8810")),
    person(given = "Arnaud",
           family = "Droit",
           role = c("fnd"),
           email = "arnaud.droit@crchudequebec.ulaval.ca"))
Description: An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.
Depends: R (>= 4.0)
Imports: R6 (>= 2.5.0), data.table (>= 1.13.2), stringr (>= 1.4.0),
        purrr (>= 0.3.4), jsonlite (>= 1.7.1), rio (>= 0.5.16), tibble
        (>= 3.0.4), dplyr (>= 1.0.2), magrittr (>= 1.5), tidyr (>=
        1.1.2), elastic (>= 1.1.0), Biostrings, Rsamtools, rtracklayer
Suggests: ggplot2 (>= 3.3.2), readr (>= 1.4.0), xml2 (>= 1.3.2), yaml
        (>= 2.2.1), testthat (>= 3.0.0), rmarkdown (>= 2.5), knitr (>=
        1.30)
License: GPL-2
LazyData: true
NeedsCompilation: no
Packaged: 2021-01-28 01:23:32 UTC; root
Author: Régis Ongaro-Carcy [aut, cre, ctb]
    (<https://orcid.org/0000-0002-0091-8810>),
  Arnaud Droit [fnd]
Maintainer: Régis Ongaro-Carcy <regis.ongaro-carcy2@crchudequebec.ulaval.ca>
Repository: CRAN
Date/Publication: 2021-01-28 15:20:02 UTC
Built: R 4.0.5; ; 2022-04-21 14:58:55 UTC; windows
