# Model Evaluation and Analysis

## Documentation for package ‘modEvA’ version 3.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

modEvA-package | Model Evaluation and Analysis
arrangePlots | Arrange plots
AUC | Area Under the Curve
confusionLabel | Label predictions according to their confusion matrix category
Dsquared | Proportion of deviance explained by a GLM
evaluate | Evaluate a GLM based on the elements of a confusion matrix.
evenness | Evenness in a binary vector.
getBins | Get bins of continuous values.
getModEqn | Get model equation
HLfit | Hosmer-Lemeshow goodness of fit
MESS | Multivariate Environmental Similarity Surfaces based on a data frame
MillerCalib | Miller's calibration satistics for logistic regression models
mod2obspred | Extract observed and predicted values from a model object.
modEvA | Model Evaluation and Analysis
modEvAmethods | Methods implemented in modEvA functions
multModEv | Multiple model evaluation
OA | Overlap Analysis
optiPair | Optimize the classification threshold for a pair of related model evaluation measures.
optiThresh | Optimize threshold for model evaluation.
plotGLM | Plot a generalized linear model
predDensity | Plot the density of predicted values for presences and absences.
predPlot | Plot predicted values for presences and absences, classified according to a prediction threshold.
prevalence | Prevalence
range01 | Shrink or stretch a vector to make it range between 0 and 1
rotif.mods | Rotifer distribution models
RsqGLM | R-squared measures for GLMs
standard01 | Standardize to 0-1 (or vice-versa)
threshMeasures | Threshold-based measures of model evaluation
varPart | Variation partitioning