Package: nimbleSCR
Type: Package
Title: Spatial Capture-Recapture (SCR) Methods Using 'nimble'
Version: 0.1.3
Maintainer: Daniel Turek <danielturek@gmail.com>
Authors@R: c(person("Richard", "Bischof", role = "aut"),
             person("Daniel", "Turek", role = c("aut", "cre"), email = "danielturek@gmail.com"),
             person("Cyril", "Milleret", role = "aut"),
             person("Torbjørn", "Ergon", role = "aut"),
             person("Pierre", "Dupont", role = "aut"),
             person("Soumen", "Dey", role = "aut"),
             person("Wei", "Zhang", role = "aut"),
             person("Perry", "de Valpine", role = "aut"))
Date: 2021-10-25
Description: Provides utility functions, distributions, and methods for improving Markov chain Monte Carlo (MCMC) sampling efficiency for ecological Spatial Capture-Recapture (SCR) and Open Population Spatial Capture-Recapture (OPSCR) models.  The methods provided implement the techniques presented in "Estimation of Large-Scale Spatial Capture-Recapture Models" (Turek, et al (2021); Eco-sphere 12(2):e03385. <doi:10.1002/ecs2.3385>).
License: GPL-3
Depends: R (>= 3.5.0), nimble
Encoding: UTF-8
RoxygenNote: 7.1.1
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), coda, basicMCMCplots
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate: calcWindowSizes.R getWindowIndex.R
        integrateIntensityLocal_normal.R integrateIntensityLocal_exp.R
        integrateIntensity_normal.R integrateIntensity_exp.R
        stratRejectionSampler_normal.R stratRejectionSampler_exp.R
        dDispersal_exp.R dHabitatMask.R dbernppAC.R
        dbernppACmovement_normal.R dbernppACmovement_exp.R
        dbernppDetection_normal.R dbernppLocalACmovement_normal.R
        dbernppLocalACmovement_exp.R dbernppLocalDetection_normal.R
        dbinomLocal_normal.R dbinom_sparseLocalSCR.R dbinom_vector.R
        dnormalizer.R dpoisLocal_normal.R dpoisppAC.R
        dpoisppDetection_normal.R dpoisppLocalDetection_normal.R
        getLocalObjects.R getLocalTraps.R getMidPointNodes.R
        getWindowCoords.R getSparseY.R localTrapCalculations.R
        makeConstantNimbleFunction.R marginalVoidProbIntegrand.R
        marginalVoidProbNumIntegration.R scaleCoordsToHabitatGrid.R
        zzz.R
NeedsCompilation: no
Packaged: 2021-10-25 15:11:32 UTC; dturek
Author: Richard Bischof [aut],
  Daniel Turek [aut, cre],
  Cyril Milleret [aut],
  Torbjørn Ergon [aut],
  Pierre Dupont [aut],
  Soumen Dey [aut],
  Wei Zhang [aut],
  Perry de Valpine [aut]
Repository: CRAN
Date/Publication: 2021-10-25 15:50:02 UTC
Built: R 4.0.5; ; 2022-04-21 07:39:05 UTC; windows
