Package: nprcgenekeepr
Type: Package
Title: Genetic Tools for Colony Management
Version: 1.0.5
Authors@R: c(
    person("Michael", "Raboin", role = c("aut")),
    person("Terry", "Therneau", role = c("aut")),
    person("Amanda", "Vinson", role = c("aut", "dtc")),
    person("R. Mark", "Sharp", email = "rmsharp@me.com", 
    comment = c(ORCID = "0000-0002-6170-6942"), 
    role = c("aut", "cre", "cph", "dtc")),
    person("Southwest National Primate Research Center NIH grant P51 RR13986", 
    role = "fnd"),
    person("Oregon National Primate Research Center grant P51 OD011092",
    role = "fnd"))
Description: Provides genetic tools for colony management and is a derivation 
    of the work in Amanda Vinson and Michael J Raboin (2015) 
    <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671785/> "A Practical 
    Approach for Designing Breeding Groups to Maximize Genetic Diversity in a 
    Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatto')".
    It provides a 'Shiny' application with an exposed API. 
    The application supports five groups of functions: 
    (1) Quality control of studbooks contained in text files or 'Excel' 
    workbooks and of pedigrees within 'LabKey' Electronic Health Records 
    (EHR); 
    (2) Creation of pedigrees from a list of animals using the 'LabKey' EHR 
    integration; 
    (3) Creation and display of an age by sex pyramid plot of the living 
    animals within the designated pedigree; 
    (4) Generation of genetic value analysis reports; and 
    (5) Creation of potential breeding groups with and without proscribed sex 
    ratios and defined maximum kinships.
URL: https://rmsharp.github.io/nprcgenekeepr/,
        https://github.com/rmsharp/nprcgenekeepr
BugReports: https://github.com/rmsharp/nprcgenekeepr/issues
Depends: R (>= 3.6.0)
Imports: anytime, futile.logger, htmlTable, lubridate, Matrix, plotrix,
        readxl, Rlabkey, rlang, shiny, stringi, utils, WriteXLS
Suggests: covr, dplyr, ggplot2, grid, kableExtra, knitr, markdown,
        pkgdown, png, rmarkdown, roxygen2 (>= 7.0.0), shinyBS,
        shinyWidgets, testthat
Language: en-US
Encoding: UTF-8
License: MIT + file LICENSE
RoxygenNote: 7.1.1
LazyData: TRUE
VignetteBuilder: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2021-03-30 02:30:25 UTC; msharp
Author: Michael Raboin [aut],
  Terry Therneau [aut],
  Amanda Vinson [aut, dtc],
  R. Mark Sharp [aut, cre, cph, dtc]
    (<https://orcid.org/0000-0002-6170-6942>),
  Southwest National Primate Research Center NIH grant P51 RR13986 [fnd],
  Oregon National Primate Research Center grant P51 OD011092 [fnd]
Maintainer: R. Mark Sharp <rmsharp@me.com>
Repository: CRAN
Date/Publication: 2021-03-31 05:10:22 UTC
Built: R 4.0.5; ; 2022-04-21 10:22:09 UTC; windows
