# Pedigree/Family-Based Genetic Association Tests Analysis and Power

## Documentation for package ‘pbatR’ version 2.2-13

- DESCRIPTION file.

## Help Pages

affectionPhe | Affection Phenotype Object
as.cped | Phenotype Object
as.ped | Pedigree Object
as.pedlist | Pedigree Object
as.phe | Phenotype Object
as.pped | Pedigree Object
c2bat | C2BAT
fread.cped | Phenotype Object
fread.ped | Pedigree Object
fread.phe | Phenotype Object
is.cped | Phenotype Object
is.finished | Cluster result functions
is.ped | Pedigree Object
is.pedlist | Pedigree Object
is.phe | Phenotype Object
is.pped | Pedigree Object
obfuscate | Obfuscating Pedigree and Phenotype Files
pbat | PBAT Graphical and Command Line Interface
pbat.clean | Cleaning pbat(), pbat.last(), pbat.m() output.
pbat.concatenate | Cluster result functions
pbat.create.commandfile | PBAT Graphical and Command Line Interface
pbat.files | PBAT Graphical and Command Line Interface
pbat.firsttime | Help and Reporting Information
pbat.get | Set Pbat Parameters
pbat.getmode | Set Pbat Parameters
pbat.getwine | Set Pbat Parameters
pbat.help | Help and Reporting Information
pbat.last | PBAT Graphical and Command Line Interface
pbat.last.rawResults | PBAT Graphical and Command Line Interface
pbat.load | Cluster result functions
pbat.m | PBAT Graphical and Command Line Interface
pbat.obj | PBAT Graphical and Command Line Interface
pbat.power | Power Exploration
pbat.powerCmd | Power Exploration
pbat.set | Set Pbat Parameters
pbat.setmode | Set Pbat Parameters
pbat.setmode.defaults | Set Pbat Parameters
pbat.setVersionCheck | Set Pbat Parameters
pbat.setwine | Set Pbat Parameters
pbat.status | PBAT Status of Run
pbat.unwork | pbatRwork Temp Directory
pbat.work | pbatRwork Temp Directory
ped.markerNames | Pedigree Object
plot.pbat | 'pbat' Object Generic Routines
plotCPed | Phenotype Object
plotPed | Pedigree Object
print.pbat | 'pbat' Object Generic Routines
read.cped | Phenotype Object
read.ped | Pedigree Object
read.phe | Phenotype Object
read.pped | Pedigree Object
sort.cped | Phenotype Object
sort.ped | Pedigree Object
sort.phe | Phenotype Object
summary.pbat | 'pbat' Object Generic Routines
top | top
write.cped | Phenotype Object
write.pbat | Saving 'pbat' Object
write.pbat.csv | Saving 'pbat' Object
write.ped | Pedigree Object
write.phe | Phenotype Object