pomp-package	pomp-package
%>%	pipe
abc	abc
abc,abcd_pomp-method	abc
abc,ANY-method	abc
abc,data.frame-method	abc
abc,missing-method	abc
abc,pomp-method	abc
abc,probed_pomp-method	abc
accumulator variables	accumulators
accumvars	accumulators
approximate Bayesian computation	abc
as.data.frame	as_data_frame
as.data.frame.abcList	as_data_frame
as.data.frame.bsmcd_pomp	as_data_frame
as.data.frame.kalmand_pomp	as_data_frame
as.data.frame.mif2List	as_data_frame
as.data.frame.pfilterd_pomp	as_data_frame
as.data.frame.pfilterList	as_data_frame
as.data.frame.pmcmcList	as_data_frame
as.data.frame.pomp	as_data_frame
as.data.frame.pompList	as_data_frame
as.data.frame.probed_pomp	as_data_frame
as.data.frame.wpfilterd_pomp	as_data_frame
as.pomp	as_pomp
bake	bake
basic components	basic_components
basic probes	basic_probes
betabinomial	betabinom
blowflies	blowflies
blowflies1	blowflies
blowflies2	blowflies
bsflu	bsflu
bsmc2	bsmc2
bsmc2,ANY-method	bsmc2
bsmc2,data.frame-method	bsmc2
bsmc2,missing-method	bsmc2
bsmc2,pomp-method	bsmc2
bspline.basis	bsplines
bsplines	bsplines
c	concat
c.Abc	concat
c.Mif2	concat
c.Pfilter	concat
c.Pmcmc	concat
c.Pomp	concat
childhood disease data	childhood
coef	coef
coef,listie-method	coef
coef,objfun-method	coef
coef,pomp-method	coef
coef<-	coef
coef<-,missing-method	coef
coef<-,objfun-method	coef
coef<-,pomp-method	coef
concat	concat
concat,Abc-method	concat
concat,Mif2-method	concat
concat,Pfilter-method	concat
concat,Pmcmc-method	concat
concat,Pomp-method	concat
cond.logLik	cond_logLik
cond.logLik,ANY-method	cond_logLik
cond.logLik,bsmcd_pomp-method	cond_logLik
cond.logLik,kalmand_pomp-method	cond_logLik
cond.logLik,missing-method	cond_logLik
cond.logLik,pfilterd_pomp-method	cond_logLik
cond.logLik,wpfilterd_pomp-method	cond_logLik
continue	continue
continue,abcd_pomp-method	continue
continue,ANY-method	continue
continue,mif2d_pomp-method	continue
continue,missing-method	continue
continue,pmcmcd_pomp-method	continue
covariates	covariate_table
covariate_table	covariate_table
covariate_table,ANY-method	covariate_table
covariate_table,character-method	covariate_table
covariate_table,missing-method	covariate_table
covariate_table,numeric-method	covariate_table
covmat	covmat
covmat,abcd_pomp-method	covmat
covmat,abcList-method	covmat
covmat,ANY-method	covmat
covmat,missing-method	covmat
covmat,pmcmcd_pomp-method	covmat
covmat,pmcmcList-method	covmat
covmat,probed_pomp-method	covmat
Csnippet	csnippet
dacca	dacca
dbetabinom	betabinom
design	design
deulermultinom	distributions
discrete_time	rprocess_spec
distributions	distributions
dmeasure	dmeasure
dmeasure specification	dmeasure_spec
dmeasure,ANY-method	dmeasure
dmeasure,missing-method	dmeasure
dmeasure,pomp-method	dmeasure
dprior	dprior
dprior,ANY-method	dprior
dprior,missing-method	dprior
dprior,pomp-method	dprior
dprocess	dprocess
dprocess specification	dprocess_spec
dprocess,ANY-method	dprocess
dprocess,missing-method	dprocess
dprocess,pomp-method	dprocess
eakf	kalman
eakf,ANY-method	kalman
eakf,data.frame-method	kalman
eakf,missing-method	kalman
eakf,pomp-method	kalman
ebola	ebola
ebolaModel	ebola
ebolaWA2014	ebola
eff.sample.size	eff_sample_size
eff.sample.size,ANY-method	eff_sample_size
eff.sample.size,bsmcd_pomp-method	eff_sample_size
eff.sample.size,missing-method	eff_sample_size
eff.sample.size,pfilterd_pomp-method	eff_sample_size
eff.sample.size,wpfilterd_pomp-method	eff_sample_size
elementary algorithms	elementary_algorithms
emeasure	emeasure
emeasure specification	emeasure_spec
emeasure,ANY-method	emeasure
emeasure,missing-method	emeasure
emeasure,pomp-method	emeasure
enkf	kalman
enkf,ANY-method	kalman
enkf,data.frame-method	kalman
enkf,kalmand_pomp-method	kalman
enkf,missing-method	kalman
enkf,pomp-method	kalman
estimation algorithms	estimation_algorithms
euler	rprocess_spec
ewcitmeas	childhood
ewmeas	childhood
expit	transformations
filter.mean	filter_mean
filter.mean,ANY-method	filter_mean
filter.mean,kalmand_pomp-method	filter_mean
filter.mean,missing-method	filter_mean
filter.mean,pfilterd_pomp-method	filter_mean
filter.traj	filter_traj
filter.traj,ANY-method	filter_traj
filter.traj,missing-method	filter_traj
filter.traj,pfilterd_pomp-method	filter_traj
filter.traj,pfilterList-method	filter_traj
filter.traj,pmcmcd_pomp-method	filter_traj
filter.traj,pmcmcList-method	filter_traj
flow	flow
flow,ANY-method	flow
flow,missing-method	flow
flow,pomp-method	flow
forecast	forecast
forecast,ANY-method	forecast
forecast,kalmand_pomp-method	forecast
forecast,missing-method	forecast
forecast,pfilterd_pomp-method	forecast
freeze	bake
gillespie	rprocess_spec
gillespie_hl	rprocess_spec
gompertz	gompertz
hitch	hitch
inv_log_barycentric	transformations
kalman	kalman
kalmanFilter	kf
listie	listie
load	load
logit	transformations
logLik	loglik
logLik,ANY-method	loglik
logLik,bsmcd_pomp-method	loglik
logLik,kalmand_pomp-method	loglik
logLik,listie-method	loglik
logLik,missing-method	loglik
logLik,nlf_objfun-method	loglik
logLik,objfun-method	loglik
logLik,pfilterd_pomp-method	loglik
logLik,pmcmcd_pomp-method	loglik
logLik,probed_pomp-method	loglik
logLik,spect_match_objfun-method	loglik
logLik,wpfilterd_pomp-method	loglik
logmeanexp	logmeanexp
log_barycentric	transformations
LondonYorke	childhood
lookup	lookup
map	skeleton_spec
mcap	mcap
melt	melt
melt,listie-method	melt
melt,pomp-method	melt
mif2	mif2
mif2,ANY-method	mif2
mif2,data.frame-method	mif2
mif2,mif2d_pomp-method	mif2
mif2,missing-method	mif2
mif2,pfilterd_pomp-method	mif2
mif2,pomp-method	mif2
mvn.diag.rw	proposals
mvn.rw	proposals
mvn.rw.adaptive	proposals
nlf	nlf
nlf_objfun	nlf
nlf_objfun,ANY-method	nlf
nlf_objfun,data.frame-method	nlf
nlf_objfun,missing-method	nlf
nlf_objfun,nlf_objfun-method	nlf
nlf_objfun,pomp-method	nlf
nonlinear forecasting	nlf
objfun	objfun
obs	obs
obs,listie-method	obs
obs,pomp-method	obs
onestep	rprocess_spec
ou2	ou2
parameter transformations	parameter_trans
parameter_trans	parameter_trans
parameter_trans,ANY,ANY-method	parameter_trans
parameter_trans,ANY,missing-method	parameter_trans
parameter_trans,character,character-method	parameter_trans
parameter_trans,Csnippet,Csnippet-method	parameter_trans
parameter_trans,function,function-method	parameter_trans
parameter_trans,missing,ANY-method	parameter_trans
parameter_trans,missing,missing-method	parameter_trans
parameter_trans,NULL,NULL-method	parameter_trans
parameter_trans,pomp_fun,pomp_fun-method	parameter_trans
parmat	parmat
parmat,ANY-method	parmat
parmat,array-method	parmat
parmat,data.frame-method	parmat
parmat,missing-method	parmat
parmat,numeric-method	parmat
partrans	partrans
partrans,ANY-method	partrans
partrans,missing-method	partrans
partrans,objfun-method	partrans
partrans,pomp-method	partrans
parus	parus
periodic.bspline.basis	bsplines
pfilter	pfilter
pfilter,ANY-method	pfilter
pfilter,data.frame-method	pfilter
pfilter,missing-method	pfilter
pfilter,objfun-method	pfilter
pfilter,pfilterd_pomp-method	pfilter
pfilter,pomp-method	pfilter
pipe	pipe
plot	plot
plot,Abc-method	plot
plot,bsmcd_pomp-method	plot
plot,Mif2-method	plot
plot,missing-method	plot
plot,Pmcmc-method	plot
plot,pomp_plottable-method	plot
plot,probed_pomp-method	plot
plot,probe_match_objfun-method	plot
plot,spectd_pomp-method	plot
plot,spect_match_objfun-method	plot
pmcmc	pmcmc
pmcmc,ANY-method	pmcmc
pmcmc,data.frame-method	pmcmc
pmcmc,missing-method	pmcmc
pmcmc,pfilterd_pomp-method	pmcmc
pmcmc,pmcmcd_pomp-method	pmcmc
pmcmc,pomp-method	pmcmc
pMess	pStop
pMess_	pStop
pomp	pomp
pomp examples	pomp_examp
pomp,package	pomp-package
pomp-class	pomp_class
pompLoad	load
pompLoad,pomp-method	load
pompUnload	load
pompUnload,pomp-method	load
pomp_fun	pomp_fun
pomp_fun,character-method	pomp_fun
pomp_fun,Csnippet-method	pomp_fun
pomp_fun,function-method	pomp_fun
pomp_fun,missing-method	pomp_fun
pomp_fun,pomp_fun-method	pomp_fun
pred.mean	pred_mean
pred.mean,ANY-method	pred_mean
pred.mean,kalmand_pomp-method	pred_mean
pred.mean,missing-method	pred_mean
pred.mean,pfilterd_pomp-method	pred_mean
pred.var	pred_var
pred.var,ANY-method	pred_var
pred.var,missing-method	pred_var
pred.var,pfilterd_pomp-method	pred_var
print	print
print,listie-method	print
print,pomp_fun-method	print
print,unshowable-method	print
prior specification	prior_spec
probe	probe
probe matching	probe_match
probe,ANY-method	probe
probe,data.frame-method	probe
probe,missing-method	probe
probe,objfun-method	probe
probe,pomp-method	probe
probe,probed_pomp-method	probe
probe,probe_match_objfun-method	probe
probe.acf	basic_probes
probe.ccf	basic_probes
probe.marginal	basic_probes
probe.mean	basic_probes
probe.median	basic_probes
probe.nlar	basic_probes
probe.period	basic_probes
probe.quantile	basic_probes
probe.sd	basic_probes
probe.var	basic_probes
probe_objfun	probe_match
probe_objfun,ANY-method	probe_match
probe_objfun,data.frame-method	probe_match
probe_objfun,missing-method	probe_match
probe_objfun,pomp-method	probe_match
probe_objfun,probed_pomp-method	probe_match
probe_objfun,probe_match_objfun-method	probe_match
profile_design	design
proposals	proposals
pStop	pStop
pStop_	pStop
pWarn	pStop
pWarn_	pStop
rbetabinom	betabinom
reexports	melt
reproducibility tools	bake
resample	resample
reulermultinom	distributions
rgammawn	distributions
ricker	ricker
rinit	rinit
rinit specification	rinit_spec
rinit,ANY-method	rinit
rinit,missing-method	rinit
rinit,pomp-method	rinit
rmeasure	rmeasure
rmeasure specification	rmeasure_spec
rmeasure,ANY-method	rmeasure
rmeasure,missing-method	rmeasure
rmeasure,pomp-method	rmeasure
rprior	rprior
rprior,ANY-method	rprior
rprior,missing-method	rprior
rprior,pomp-method	rprior
rprocess	rprocess
rprocess specification	rprocess_spec
rprocess,ANY-method	rprocess
rprocess,missing-method	rprocess
rprocess,pomp-method	rprocess
runif_design	design
rw.sd	rw_sd
rw2	rw2
sannbox	sannbox
saved.states	saved_states
saved.states,ANY-method	saved_states
saved.states,missing-method	saved_states
saved.states,pfilterd_pomp-method	saved_states
saved.states,pfilterList-method	saved_states
show	show
show,covartable-method	show
show,discreteRprocPlugin-method	show
show,eulerRprocPlugin-method	show
show,gillespieRprocPlugin-method	show
show,listie-method	show
show,mapPlugin-method	show
show,onestepRprocPlugin-method	show
show,partransPlugin-method	show
show,pomp_fun-method	show
show,rprocPlugin-method	show
show,skelPlugin-method	show
show,unshowable-method	show
show,vectorfieldPlugin-method	show
simulate	simulate
simulate,data.frame-method	simulate
simulate,missing-method	simulate
simulate,objfun-method	simulate
simulate,pomp-method	simulate
sir	sir
SIR models	sir
sir2	sir
skeleton	skeleton
skeleton specification	skeleton_spec
skeleton,ANY-method	skeleton
skeleton,missing-method	skeleton
skeleton,pomp-method	skeleton
slice_design	design
sobol_design	design
solibs<-	load
solibs<-,pomp-method	load
spect	spect
spect,ANY-method	spect
spect,data.frame-method	spect
spect,missing-method	spect
spect,objfun-method	spect
spect,pomp-method	spect
spect,spectd_pomp-method	spect
spect,spect_match_objfun-method	spect
spectrum matching	spect_match
spect_objfun	spect_match
spect_objfun,ANY-method	spect_match
spect_objfun,data.frame-method	spect_match
spect_objfun,missing-method	spect_match
spect_objfun,pomp-method	spect_match
spect_objfun,spectd_pomp-method	spect_match
spect_objfun,spect_match_objfun-method	spect_match
spy	spy
spy,ANY-method	spy
spy,missing-method	spy
spy,pomp-method	spy
states	states
states,listie-method	states
states,pomp-method	states
stew	bake
summary	summary
summary,objfun-method	summary
summary,probed_pomp-method	summary
summary,spectd_pomp-method	summary
systematic_resample	resample
time	time
time,missing-method	time
time,pomp-method	time
time<-	time
time<-,pomp-method	time
timezero	timezero
timezero,ANY-method	timezero
timezero,missing-method	timezero
timezero,pomp-method	timezero
timezero<-	timezero
timezero<-,ANY-method	timezero
timezero<-,missing-method	timezero
timezero<-,pomp-method	timezero
traces	traces
traces,abcd_pomp-method	traces
traces,abcList-method	traces
traces,ANY-method	traces
traces,mif2d_pomp-method	traces
traces,mif2List-method	traces
traces,missing-method	traces
traces,pmcmcd_pomp-method	traces
traces,pmcmcList-method	traces
trajectory	trajectory
trajectory matching	traj_match
trajectory,ANY-method	trajectory
trajectory,data.frame-method	trajectory
trajectory,missing-method	trajectory
trajectory,pomp-method	trajectory
trajectory,traj_match_objfun-method	trajectory
traj_objfun	traj_match
traj_objfun,ANY-method	traj_match
traj_objfun,data.frame-method	traj_match
traj_objfun,missing-method	traj_match
traj_objfun,pomp-method	traj_match
traj_objfun,traj_match_objfun-method	traj_match
transformations	transformations
undefined	undefined
undefined,pomp_fun-method	undefined
undefined,rprocPlugin-method	undefined
undefined,skelPlugin-method	undefined
userdata	userdata
vectorfield	skeleton_spec
verhulst	verhulst
vmeasure	vmeasure
vmeasure specification	vmeasure_spec
vmeasure,ANY-method	vmeasure
vmeasure,missing-method	vmeasure
vmeasure,pomp-method	vmeasure
window	window
window,pomp-method	window
workhorses	workhorses
wpfilter	wpfilter
wpfilter,ANY-method	wpfilter
wpfilter,data.frame-method	wpfilter
wpfilter,missing-method	wpfilter
wpfilter,pomp-method	wpfilter
wpfilter,wpfilterd_pomp-method	wpfilter
[,listie-method	listie
[-listie	listie
