# Random-Effect Multiple QTL Mapping in Autopolyploids

## Documentation for package ‘qtlpoly’ version 0.2.3

- DESCRIPTION file.

## Help Pages

B2721 | Autotetraploid potato dataset
breeding_values | Prediction of QTL-based breeding values from REMIM model
feim | Fixed-effect interval mapping (FEIM)
fit_model | Fits multiple QTL models
hexafake | Simulated autohexaploid dataset.
maps4x | Autotetraploid potato map
maps6x | Simulated autohexaploid map
modify_qtl | Modify QTL model
null_model | Null model
optimize_qtl | Model optimization
permutations | Fixed-effect interval mapping (FEIM) model permutations
pheno4x | Autotetraploid potato phenotypes
pheno6x | Simulated phenotypes
plot.qtlpoly.bvalues | Prediction of QTL-based breeding values from REMIM model
plot.qtlpoly.effects | QTL allele effect estimation
plot.qtlpoly.perm | Fixed-effect interval mapping (FEIM) model permutations
plot_profile | Logarithm of _P_-value (LOP) profile plots
plot_qtl | QTL heritability and significance plot
plot_sint | QTLs with respective support interval plots
print.qtlpoly.data | Read genotypic and phenotypic data
print.qtlpoly.feim | Fixed-effect interval mapping (FEIM)
print.qtlpoly.modify | Modify QTL model
print.qtlpoly.null | Null model
print.qtlpoly.optimize | Model optimization
print.qtlpoly.perm | Fixed-effect interval mapping (FEIM) model permutations
print.qtlpoly.profile | QTL profiling
print.qtlpoly.remim | Random-effect multiple interval mapping (REMIM)
print.qtlpoly.search | QTL forward search
print.qtlpoly.simul | Simulations of multiple QTL
profile_qtl | QTL profiling
qtl_effects | QTL allele effect estimation
read_data | Read genotypic and phenotypic data
remim | Random-effect multiple interval mapping (REMIM)
search_qtl | QTL forward search
simulate_qtl | Simulations of multiple QTL
summary.qtlpoly.fitted | Fits multiple QTL models