# Import, Process, Analyse, and Calculate Rates from Respirometry Data

## Documentation for package ‘respR’ version 2.0.2

- DESCRIPTION file.

## Help Pages

adjust_rate | Adjust rates to account for background respiration or oxygen flux.
adjust_rate.ft | Adjust rates in flowthrough respirometry to account for background respiration or oxygen flux.
algae.rd | Oxygen production respirometry data
auto_rate | Automatically determine most linear, highest, lowest and rolling oxygen uptake or production rates
background_con.rd | Background respirometry data (constant)
background_exp.rd | Background respirometry data (exponential)
background_lin.rd | Background respirometry data (linear)
calc_rate | Calculate rate of change in oxygen over time
calc_rate.bg | Calculate background oxygen uptake or input rates
calc_rate.ft | Calculate rate of change in oxygen from flowthrough respirometry data
convert_DO | Convert between units of dissolved oxygen
convert_rate | Convert a unitless oxygen rate value to absolute, mass-specific or area-specific rate
convert_rate.ft | Convert a unitless oxygen rate value from flowthrough respirometry to absolute, mass-specific or area-specific rates
convert_val | Convert values of temperature, volume, mass, area, and atmospheric pressure to different units
flowthrough.rd | Flowthrough respirometry data on the chiton, _Mopalia lignosa_
flowthrough_mult.rd | Multi-column flowthrough respirometry data
flowthrough_sim.rd | Flowthrough respirometry data with increasing background rate
format_time | Parse date-time data to numeric time for use in respR functions
import_file | Import respirometry system raw data files
inspect | Explore and visualise respirometry data and check for common errors
inspect.ft | Explore and visualise flowthrough respirometry data and check for errors
intermittent.rd | Respirometry data of the sea urchin, _Heliocidaris Erythrogramma_
mean.adjust_rate | Average adjust_rate object rates
mean.adjust_rate.ft | Average adjust_rate.ft rates
mean.auto_rate | Average auto_rate object rates
mean.calc_rate | Average calc_rate object rates
mean.calc_rate.bg | Average calc_rate.bg object rates
mean.calc_rate.ft | Average calc_rate.ft object rates
mean.convert_DO | Average convert_DO object values
mean.convert_rate | Average convert_rate object rates
mean.convert_rate.ft | Average convert_rate.ft object rates
mean.inspect | Average inspect object rates
mean.inspect.ft | Average inspect.ft object rates
mean.oxy_crit | Average oxy_crit object rates
oxy_crit | Calculate critical oxygen values, such as PCrit
plot.adjust_rate | Plot adjust_rate objects
plot.adjust_rate.ft | Plot adjust_rate.ft objects
plot.auto_rate | Plot auto_rate objects
plot.calc_rate | Plot calc_rate objects
plot.calc_rate.bg | Plot calc_rate.bg objects
plot.calc_rate.ft | Plot calc_rate.ft objects
plot.convert_DO | Plot convert_DO objects
plot.convert_rate | Plot convert_rate objects
plot.convert_rate.ft | Plot convert_rate.ft objects
plot.inspect | Plot inspect objects
plot.inspect.ft | Plot inspect.ft objects
plot.oxy_crit | Plot oxy_crit objects
plot_ar | Plot auto_rate summary tables
print.adjust_rate | Print adjust_rate objects
print.adjust_rate.ft | Print adjust_rate.ft objects
print.auto_rate | Print auto_rate objects
print.calc_rate | Print calc_rate objects
print.calc_rate.bg | Print calc_rate.bg objects
print.calc_rate.ft | Print calc_rate.ft objects
print.convert_DO | Print convert_DO objects
print.convert_rate | Print convert_rate objects
print.convert_rate.ft | Print convert_rate.ft objects
print.inspect | Print inspect objects
print.inspect.ft | Print inspect.ft objects
print.oxy_crit | Print oxy_crit objects
sardine.rd | Respirometry data of the sardine, _Sardinops sagax_
squid.rd | Respirometry data of the squid, _Doryteuthis opalescens_
subsample | Subsample a data frame object
subset_data | Subset a 'data.frame', 'inspect', or 'inspect.ft' object
subset_rate | Subset auto_rate results based on a range of criteria
summary.adjust_rate | Summarise adjust_rate objects
summary.adjust_rate.ft | Summarise adjust_rate.ft objects
summary.auto_rate | Summarise auto_rate objects
summary.calc_rate | Summarise calc_rate objects
summary.calc_rate.bg | Summarise calc_rate.bg objects
summary.calc_rate.ft | Summarise calc_rate.ft objects
summary.convert_DO | Summarise convert_DO objects
summary.convert_rate | Summarise convert_rate objects
summary.convert_rate.ft | Summarise convert_rate.ft objects
summary.inspect | Summarise inspect objects
summary.inspect.ft | Summarise inspect.ft objects
summary.oxy_crit | Summarise oxy_crit objects
test_lin_data | Output objects for the function 'test_lin'
unit_args | Print examples of unit inputs for use in convert_DO, convert_rate, and convert_rate.ft
urchins.rd | Multi-column respirometry data of the sea urchin, _Heliocidaris Erythrogramma_, including background respiration
zeb_intermittent.rd | Respirometry data of a zebrafish, _Danio rerio_