seqinr-package	seqinr-package
a	a
aaa	aaa
aacost	aacost
aaindex	aaindex
AAstat	AAstat
acnucclose	acnucopen
acnucopen	acnucopen
al2bp	al2bp
alllistranks	alllistranks
alr	alllistranks
amb	amb
AnoukResult	AnoukResult
as.alignment	as.alignment
as.matrix.alignment	as.matrix.alignment
as.SeqAcnucWeb	SeqAcnucWeb
as.SeqFastaAA	SeqFastaAA
as.SeqFastadna	SeqFastadna
as.SeqFrag	SeqFrag
autosocket	autosocket
baselineabif	baselineabif
bma	bma
c2s	c2s
cai	cai
caitab	caitab
cfl	countfreelists
chargaff	chargaff
choosebank	choosebank
circle	circle
clfcd	crelistfromclientdata
clientid	acnucopen
closebank	closebank
clustal	clustal
col2alpha	col2alpha
comp	comp
computePI	computePI
con	consensus
consensus	consensus
count	count
countfreelists	countfreelists
countsubseqs	countsubseqs
crelistfromclientdata	crelistfromclientdata
css	countsubseqs
dia.bactgensize	dia.bactgensize
dia.db.growth	get.db.growth
dinucl	dinucl
dist.alignment	dist.alignment
dotchart.uco	dotchart.uco
dotPlot	dotPlot
draw.oriloc	draw.oriloc
draw.rearranged.oriloc	draw.rearranged.oriloc
draw.recstat	draw.recstat
ec999	ec999
ECH	ECH
EXP	EXP
exseq	extractseqs
extract.breakpoints	extract.breakpoints
extractseqs	extractseqs
FASTA	read.fasta
fasta	fasta
fastacc	fastacc
gb2fasta	gb2fasta
gbk2g2	gbk2g2
gbk2g2.euk	gbk2g2.euk
GC	GC
GC1	GC
GC2	GC
GC3	GC
gcO2	gcO2
GCpos	GC
gcT	gcT
get.db.growth	get.db.growth
getAnnot	getAnnot
getAnnot.default	getAnnot
getAnnot.list	getAnnot
getAnnot.logical	getAnnot
getAnnot.qaw	getAnnot
getAnnot.SeqAcnucWeb	getAnnot
getAnnot.SeqFastaAA	getAnnot
getAnnot.SeqFastadna	getAnnot
getAttributsocket	isenum
getFrag	getFrag
getFrag.character	getFrag
getFrag.default	getFrag
getFrag.list	getFrag
getFrag.logical	getFrag
getFrag.qaw	getFrag
getFrag.SeqAcnucWeb	getFrag
getFrag.SeqFastaAA	getFrag
getFrag.SeqFastadna	getFrag
getFrag.SeqFrag	getFrag
getKeyword	getKeyword
getKeyword.default	getKeyword
getKeyword.list	getKeyword
getKeyword.logical	getKeyword
getKeyword.qaw	getKeyword
getKeyword.SeqAcnucWeb	getKeyword
getLength	getLength
getLength.character	getLength
getLength.default	getLength
getLength.list	getLength
getLength.logical	getLength
getLength.qaw	getLength
getLength.SeqAcnucWeb	getLength
getLength.SeqFastaAA	getLength
getLength.SeqFastadna	getLength
getLength.SeqFrag	getLength
getlistrank	getlistrank
getliststate	getliststate
getLocation	getLocation
getLocation.default	getLocation
getLocation.list	getLocation
getLocation.logical	getLocation
getLocation.qaw	getLocation
getLocation.SeqAcnucWeb	getLocation
getName	getName
getName.default	getName
getName.list	getName
getName.logical	getName
getName.qaw	getName
getName.SeqAcnucWeb	getName
getName.SeqFastaAA	getName
getName.SeqFastadna	getName
getName.SeqFrag	getName
getNumber.socket	isenum
getSequence	getSequence
getSequence.character	getSequence
getSequence.default	getSequence
getSequence.list	getSequence
getSequence.logical	getSequence
getSequence.qaw	getSequence
getSequence.SeqAcnucWeb	getSequence
getSequence.SeqFastaAA	getSequence
getSequence.SeqFastadna	getSequence
getSequence.SeqFrag	getSequence
getTrans	getTrans
getTrans.character	getTrans
getTrans.default	getTrans
getTrans.list	getTrans
getTrans.logical	getTrans
getTrans.qaw	getTrans
getTrans.SeqAcnucWeb	getTrans
getTrans.SeqFastadna	getTrans
getTrans.SeqFrag	getTrans
getType	getType
gfrag	gfrag
ghelp	ghelp
gln	getliststate
glr	getlistrank
gls	getliststate
gs500liz	gs500liz
identifiler	identifiler
is.SeqAcnucWeb	SeqAcnucWeb
is.SeqFastaAA	SeqFastaAA
is.SeqFastadna	SeqFastadna
is.SeqFrag	SeqFrag
isenum	isenum
isn	isenum
JLO	JLO
kaks	kaks
kaksTorture	kaks-torture
kdb	knowndbs
knowndbs	knowndbs
lseqinr	lseqinr
m16j	m16j
mase	mase
modifylist	modifylist
move	move
msf	msf
mv	move
n2s	n2s
oriloc	oriloc
parser.socket	parser.socket
peakabif	peakabif
permutation	permutation
pga	prepgatannots
phylip	phylip
pK	pK
plot.SeqAcnucWeb	plot.SeqAcnucWeb
plotabif	plotabif
plotladder	plotladder
plotPanels	plotPanels
pmw	pmw
prepgetannots	prepgatannots
prettyseq	prettyseq
print.qaw	print.qaw
print.SeqAcnucWeb	print.SeqAcnucWeb
prochlo	prochlo
query	query
quitacnuc	acnucopen
read.abif	read.abif
read.alignment	read.alignment
read.fasta	read.fasta
readAnnots.socket	getAnnot
readBins	readBins
readfasta	read.fasta
readfirstrec	readfirstrec
readPanels	readPanels
readsmj	readsmj
rearranged.oriloc	rearranged.oriloc
recstat	recstat
residuecount	residuecount
revaligntest	revaligntest
reverse.align	reverse.align
rho	zscore
rot13	rot13
rscu	uco
s2c	s2c
s2n	s2n
savelist	savelist
SeqAcnucWeb	SeqAcnucWeb
SeqFastaAA	SeqFastaAA
SeqFastadna	SeqFastadna
SeqFrag	SeqFrag
seqinr	seqinr-package
SEQINR.UTIL	SEQINR.UTIL
setlistname	setlistname
splitseq	splitseq
stresc	stresc
stutterabif	stutterabif
summary.SeqFastaAA	SeqFastaAA
summary.SeqFastadna	SeqFastadna
swap	swap
syncodons	syncodons
synsequence	synsequence
tablecode	tablecode
test.co.recstat	test.co.recstat
test.li.recstat	test.li.recstat
toyaa	toyaa
toycodon	toycodon
translate	translate
trimSpace	trimSpace
uco	uco
ucoweight	ucoweight
waterabs	waterabs
where.is.this.acc	where.is.this.acc
words	words
words.pos	words.pos
write.fasta	write.fasta
zscore	zscore
