dflatExample            A subset of the DFLAT gene sets
gse32472Example         A subset of the GSE32472 BPD data set
gse32472ExampleTempoResults
                        TEMPO results for the GSE32472 subset example
                        data set
loadCLS                 Load a categorical or continuous cls formatted
                        file.
loadGCT                 Load a Gene Cluster Text formatted file
loadGMT                 Load a Gene Matrix Transposed formatted file
tempo.mkplot            Make a plot for a specified gene sets
tempo.permutationTest   Permutation testing for TEMPO
tempo.run               The main method.
tempo.runInstance       Build models for all pathways using the control
                        data and test on the test population.
tempo.writeOutput       Write output
