# Tidy Tools for Paleoenvironmental Archives

## Documentation for package ‘tidypaleo’ version 0.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

age_depth_as_sec_axis | Use an age depth model as a second ggplot axis
age_depth_exact | Age-depth model interpolators/extrapolators
age_depth_extrapolate | Age-depth model interpolators/extrapolators
age_depth_interpolate | Age-depth model interpolators/extrapolators
age_depth_model | Create age depth models
age_depth_na | Age-depth model interpolators/extrapolators
alta_lake_14C_ages | Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_210Pb_ages | Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_bacon_ages | Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_geochem | Alta Lake Lead-210 and Carbon-14 Ages
as_trans_factory | Coerce and validate transforms and functions that produce them
biplot.nested_prcomp | Plot a nested analysis
facet_abundance | Facet for relative abundance data
facet_abundanceh | Facet for relative abundance data
facet_geochem_grid | Facet for relative abundance data
facet_geochem_gridh | Facet for relative abundance data
facet_geochem_wrap | Facet for relative abundance data
facet_geochem_wraph | Facet for relative abundance data
GeomAreah | Vertical ribbons and area plots
GeomColSegs | Useful geometries for strat diagrams
GeomColSegsh | Useful geometries for strat diagrams
GeomLineh | Useful geometries for strat diagrams
GeomRibbonh | Vertical ribbons and area plots
geom_areah | Vertical ribbons and area plots
geom_areah_exaggerate | Exaggerated geometries that do not train scales
geom_area_exaggerate | Exaggerated geometries that do not train scales
geom_col_segs | Useful geometries for strat diagrams
geom_col_segsh | Useful geometries for strat diagrams
geom_lineh | Connect observations in the vertical direction
geom_lineh_exaggerate | Exaggerated geometries that do not train scales
geom_line_exaggerate | Exaggerated geometries that do not train scales
geom_point_exaggerate | Exaggerated geometries that do not train scales
geom_ribbonh | Vertical ribbons and area plots
halifax_lakes_plottable | Halifax lakes water chemistry and top/bottom diatom counts
keji_lakes_plottable | Keji lakes core diatom counts
kellys_lake_ages | Kellys Lake Data
kellys_lake_cladocera | Kellys Lake Data
kellys_lake_geochem | Kellys Lake Data
label_geochem | Geochem facet labelers
label_species | Species facet labellers
layer_dendrogram | Add a dendrogram as a layer or facet
layer_scores | Add scores to a plot
layer_zone_boundaries | Add a dendrogram as a layer or facet
long_lake_14C_ages | Long Lake Carbon-14 Ages
long_lake_bacon_ages | Long Lake Carbon-14 Ages
long_lake_plottable | Long Lake Carbon-14 Ages
nested_analysis | Perform an analysis on a nested data matrix
nested_chclust_coniss | Nested (Constrained) hierarchical clustering
nested_chclust_conslink | Nested (Constrained) hierarchical clustering
nested_data | Prepare a parameter-long data frame for statistical analysis
nested_hclust | Nested (Constrained) hierarchical clustering
nested_prcomp | Nested Principal Components Analysis (PCA)
plot.age_depth_model | Plot an age depth model using base graphics
plot.nested_analysis | Plot a nested analysis
plot_layer_dendrogram | Add a dendrogram as a layer or facet
plot_layer_scores | Add scores to a plot
plot_nested_analysis | Plot a nested analysis
predict.age_depth_model | Predict age and depth values
predict_age | Predict age and depth values
predict_depth | Predict age and depth values
rotated_axis_labels | Common plot modifications for stratigraphic plots
rotated_facet_labels | Common plot modifications for stratigraphic plots
scale_x_abundance | Scales for relative abundance values
scale_x_age_depth | Age-depth scales
scale_x_depth_age | Age-depth scales
scale_y_abundance | Scales for relative abundance values
scale_y_age_depth | Age-depth scales
scale_y_depth_age | Age-depth scales
sequential_layer_facets | Change facet ordering behaviour
StatNestedHclust | Display a dendrogram as a ggplot2 layer
stat_nested_hclust | Display a dendrogram as a ggplot2 layer
theme_paleo | A Paleo-friendly ggplot2 theme
unnested_data | Prepare a parameter-long data frame for statistical analysis
validate_trans | Coerce and validate transforms and functions that produce them
validate_trans_factory | Coerce and validate transforms and functions that produce them