vegan-package	vegan-package
add1.cca	add1.cca
addCailliez	vegan-internal
addLingoes	vegan-internal
adipart	adipart
adipart.default	adipart
adipart.formula	adipart
adonis	vegan-deprecated
adonis2	adonis
AIC.fitspecaccum	specaccum
AIC.radfit	radfit
AIC.radfit.frame	radfit
alias.cca	goodness.cca
anosim	anosim
anova.betadisper	betadisper
anova.cca	anova.cca
as.fisher	fisherfit
as.hclust.spantree	spantree
as.mcmc.oecosimu	oecosimu
as.mcmc.permat	permatfull
as.mlm	vegan-defunct
as.mlm.cca	vegan-defunct
as.mlm.rda	vegan-defunct
as.preston	fisherfit
as.rad	radfit
as.ts.oecosimu	oecosimu
as.ts.permat	permatfull
avgdist	avgdist
BCI	BCI
BCI.env	BCI
beals	beals
betadisper	betadisper
betadiver	betadiver
bgdispersal	bgdispersal
bioenv	bioenv
bioenv.default	bioenv
bioenv.formula	bioenv
bioenvdist	bioenv
biplot.cca	biplot.rda
biplot.CCorA	CCorA
biplot.rda	biplot.rda
boxplot.betadisper	betadisper
boxplot.permustats	permustats
boxplot.specaccum	specaccum
bstick	screeplot.cca
bstick.cca	screeplot.cca
bstick.decorana	screeplot.cca
bstick.default	screeplot.cca
bstick.prcomp	screeplot.cca
bstick.princomp	screeplot.cca
c.permustats	permustats
calibrate	predict.cca
calibrate.cca	predict.cca
calibrate.ordisurf	ordisurf
capscale	capscale
cascadeKM	cascadeKM
cca	cca
cca.default	cca
cca.formula	cca
cca.object	cca.object
CCorA	CCorA
centroids.cca	vegan-internal
chaodist	designdist
cIndexKM	cascadeKM
clamtest	clamtest
coef.cca	predict.cca
coef.radfit	radfit
coef.radfit.frame	radfit
coef.rda	predict.cca
commsim	commsim
commsimulator	vegan-defunct
confint.MOStest	MOStest
contribdiv	contribdiv
cooks.distance.cca	influence.cca
cophenetic.spantree	spantree
coverscale	vegemite
cutreeord	reorder.hclust
dbrda	capscale
decorana	decorana
decostand	decostand
density.adonis	vegan-defunct
density.anosim	vegan-defunct
density.mantel	vegan-defunct
density.mrpp	vegan-defunct
density.oecosimu	vegan-defunct
density.permustats	permustats
density.permutest.cca	vegan-defunct
density.protest	vegan-defunct
densityplot.adonis	vegan-defunct
densityplot.oecosimu	vegan-defunct
densityplot.permustats	permustats
designdist	designdist
deviance.cca	deviance.cca
deviance.fitspecaccum	specaccum
deviance.radfit	radfit
deviance.radfit.frame	radfit
deviance.rda	deviance.cca
df.residual.cca	influence.cca
dispindmorisita	dispindmorisita
dispweight	dispweight
distconnected	distconnected
diversity	diversity
downweight	decorana
drarefy	rarefy
drop1.cca	add1.cca
dune	dune
dune.env	dune
dune.phylodis	dune.taxon
dune.taxon	dune.taxon
eigengrad	wascores
eigenvals	eigenvals
eigenvals.betadisper	betadisper
eigenvals.cca	eigenvals
eigenvals.default	eigenvals
eigenvals.dudi	eigenvals
eigenvals.pca	eigenvals
eigenvals.pcnm	eigenvals
eigenvals.pco	eigenvals
eigenvals.prcomp	eigenvals
eigenvals.princomp	eigenvals
eigenvals.wcmdscale	eigenvals
envfit	envfit
envfit.default	envfit
envfit.formula	envfit
estaccumR	specpool
estimateR	specpool
estimateR.data.frame	specpool
estimateR.default	specpool
estimateR.matrix	specpool
eventstar	eventstar
extractAIC.cca	deviance.cca
factorfit	envfit
fieller.MOStest	MOStest
fisher.alpha	diversity
fisherfit	fisherfit
fitspecaccum	specaccum
fitted.capscale	predict.cca
fitted.cca	predict.cca
fitted.dbrda	predict.cca
fitted.procrustes	procrustes
fitted.radfit	radfit
fitted.radfit.frame	radfit
fitted.rda	predict.cca
gdispweight	dispweight
getNumObs	vegan-defunct
getPermuteMatrix	vegan-internal
goodness	goodness.cca
goodness.cca	goodness.cca
goodness.metaMDS	goodness.metaMDS
goodness.monoMDS	goodness.metaMDS
GowerDblcen	vegan-internal
hatvalues.cca	influence.cca
hatvalues.rda	influence.cca
head.summary.cca	plot.cca
hierParseFormula	vegan-internal
hiersimu	adipart
hiersimu.default	adipart
hiersimu.formula	adipart
howHead	vegan-internal
humpfit	vegan-defunct
identify.ordiplot	ordiplot
indpower	indpower
inertcomp	goodness.cca
initMDS	metaMDS
intersetcor	goodness.cca
isomap	isomap
isomapdist	isomap
kendall.global	kendall.global
kendall.post	kendall.global
labels.cca	plot.cca
labels.envfit	envfit
lines.fitspecaccum	specaccum
lines.permat	permatfull
lines.preston	fisherfit
lines.prestonfit	fisherfit
lines.procrustes	procrustes
lines.radfit	radfit
lines.radline	radfit
lines.spantree	spantree
lines.specaccum	specaccum
linestack	linestack
logLik, radfit	radfit
logLik, radfit.frame	radfit
logLik.fitspecaccum	specaccum
make.cepnames	make.cepnames
make.commsim	commsim
mantel	mantel
mantel.correlog	mantel.correlog
mantel.partial	mantel
MDSrotate	MDSrotate
meandist	mrpp
metaMDS	metaMDS
metaMDSdist	metaMDS
metaMDSiter	metaMDS
metaMDSredist	metaMDS
metaMDSrotate	vegan-defunct
mite	mite
mite.env	mite
mite.pcnm	mite
mite.xy	mite
model.frame.cca	cca.object
model.matrix.cca	cca.object
model.matrix.rda	cca.object
monoMDS	monoMDS
MOStest	MOStest
mrpp	mrpp
mso	mso
msoplot	mso
multipart	multipart
multipart.default	multipart
multipart.formula	multipart
nestedbetajac	nestedtemp
nestedbetasor	nestedtemp
nestedchecker	nestedtemp
nesteddisc	nestedtemp
nestedn0	nestedtemp
nestednodf	nestedtemp
nestedtemp	nestedtemp
no.shared	distconnected
nobs.betadisper	nobs.cca
nobs.cca	nobs.cca
nobs.CCorA	nobs.cca
nobs.decorana	nobs.cca
nobs.fitspecaccum	specaccum
nobs.isomap	nobs.cca
nobs.metaMDS	nobs.cca
nobs.pcnm	nobs.cca
nobs.procrustes	nobs.cca
nobs.rad	nobs.cca
nobs.varpart	nobs.cca
nobs.wcmdscale	nobs.cca
nullmodel	nullmodel
oecosimu	oecosimu
ordConstrained	cca.object
orderingKM	cascadeKM
ordiareatest	ordihull
ordiArgAbsorber	vegan-internal
ordiArrowMul	ordiArrowTextXY
ordiarrows	ordiarrows
ordiArrowTextXY	ordiArrowTextXY
ordibar	ordihull
ordicloud	ordixyplot
ordicluster	ordihull
ordiellipse	ordihull
ordigrid	ordiarrows
ordihull	ordihull
ordilabel	ordilabel
ordilattice.getEnvfit	ordixyplot
ordimedian	betadisper
ordiNAexclude	vegan-internal
ordiNApredict	vegan-internal
ordiParseFormula	vegan-internal
ordiplot	ordiplot
ordipointlabel	ordipointlabel
ordiR2step	ordistep
ordiresids	ordiresids
ordisegments	ordiarrows
ordispider	ordihull
ordisplom	ordixyplot
ordistep	ordistep
ordisurf	ordisurf
ordisurf.default	ordisurf
ordisurf.formula	ordisurf
ordiTerminfo	vegan-internal
orditkplot	orditkplot
orditorp	orditorp
ordixyplot	ordixyplot
ordiYbar	cca.object
pairs.permustats	permustats
panel.ordi	ordixyplot
panel.ordi3d	ordixyplot
panel.ordiarrows	ordixyplot
pasteCall	vegan-internal
pcnm	pcnm
permatfull	permatfull
permatswap	permatfull
permustats	permustats
permustats.anosim	permustats
permustats.anova.cca	permustats
permustats.CCorA	permustats
permustats.envfit	permustats
permustats.factorfit	permustats
permustats.mantel	permustats
permustats.mrpp	permustats
permustats.mso	permustats
permustats.oecosimu	permustats
permustats.ordiareatest	permustats
permustats.permutest.betadisper	permustats
permustats.permutest.cca	permustats
permustats.protest	permustats
permustats.vectorfit	permustats
permutations	permutations
permuted.index	vegan-defunct
permuted.index2	vegan-defunct
permutest	anova.cca
permutest.betadisper	permutest.betadisper
permutest.cca	anova.cca
persp.renyiaccum	renyi
persp.tsallisaccum	tsallis
plot.anosim	anosim
plot.betadisper	betadisper
plot.betadiver	betadiver
plot.cascadeKM	cascadeKM
plot.cca	plot.cca
plot.clamtest	clamtest
plot.contribdiv	contribdiv
plot.decorana	decorana
plot.envfit	envfit
plot.fisher	fisherfit
plot.fisherfit	fisherfit
plot.fitspecaccum	specaccum
plot.isomap	isomap
plot.mantel.correlog	mantel.correlog
plot.meandist	mrpp
plot.metaMDS	metaMDS
plot.monoMDS	monoMDS
plot.MOStest	MOStest
plot.nestednodf	nestedtemp
plot.nestedtemp	nestedtemp
plot.ordipointlabel	ordipointlabel
plot.ordisurf	ordisurf
plot.orditkplot	orditkplot
plot.permat	permatfull
plot.poolaccum	specpool
plot.prc	prc
plot.preston	fisherfit
plot.prestonfit	fisherfit
plot.procrustes	procrustes
plot.rad	radfit
plot.radfit	radfit
plot.radfit.frame	radfit
plot.radline	radfit
plot.renyi	renyi
plot.renyiaccum	renyi
plot.spantree	spantree
plot.specaccum	specaccum
plot.taxondive	taxondive
plot.varpart	varpart
plot.varpart234	varpart
plot.vegandensity	vegan-defunct
plot.wcmdscale	wcmdscale
points.cca	plot.cca
points.decorana	decorana
points.metaMDS	metaMDS
points.monoMDS	monoMDS
points.ordiplot	ordiplot
points.orditkplot	orditkplot
points.procrustes	procrustes
points.radfit	radfit
points.radline	radfit
poolaccum	specpool
postMDS	metaMDS
prc	prc
predict.cca	predict.cca
predict.decorana	predict.cca
predict.fitspecaccum	specaccum
predict.procrustes	procrustes
predict.radfit	radfit
predict.radfit.frame	radfit
predict.radline	radfit
predict.rda	predict.cca
predict.specaccum	specaccum
pregraphKM	cascadeKM
prepanel.ordi3d	ordixyplot
prestondistr	fisherfit
prestonfit	fisherfit
print.betadisper	betadisper
print.cca	cca.object
print.commsim	commsim
print.nullmodel	nullmodel
print.permat	permatfull
print.simmat	nullmodel
print.specaccum	specaccum
print.summary.cca	plot.cca
print.summary.decorana	decorana
print.summary.permat	permatfull
procrustes	procrustes
profile.MOStest	MOStest
protest	procrustes
pyrifos	pyrifos
qqmath.permustats	permustats
qqnorm.permustats	permustats
qr.cca	influence.cca
rad.lognormal	radfit
rad.null	radfit
rad.preempt	radfit
rad.zipf	radfit
rad.zipfbrot	radfit
radfit	radfit
radfit.data.frame	radfit
radfit.default	radfit
radlattice	radfit
rankindex	rankindex
rarecurve	rarefy
rarefy	rarefy
rareslope	rarefy
raupcrick	raupcrick
rda	cca
rda.default	cca
rda.formula	cca
read.cep	read.cep
renyi	renyi
renyiaccum	renyi
reorder.hclust	reorder.hclust
residuals.cca	predict.cca
residuals.procrustes	procrustes
rev.hclust	reorder.hclust
rrarefy	rarefy
RsquareAdj	RsquareAdj
RsquareAdj.cca	RsquareAdj
RsquareAdj.default	RsquareAdj
RsquareAdj.glm	RsquareAdj
RsquareAdj.lm	RsquareAdj
RsquareAdj.rda	RsquareAdj
rstandard.cca	influence.cca
rstudent.cca	influence.cca
scores	scores
scores.betadisper	betadisper
scores.betadiver	betadiver
scores.cca	plot.cca
scores.decorana	decorana
scores.default	scores
scores.envfit	envfit
scores.hclust	reorder.hclust
scores.lda	scores
scores.metaMDS	metaMDS
scores.monoMDS	monoMDS
scores.ordihull	ordihull
scores.ordiplot	ordiplot
scores.orditkplot	orditkplot
scores.pcnm	pcnm
scores.rda	plot.cca
scores.wcmdscale	wcmdscale
screeplot.cca	screeplot.cca
screeplot.decorana	screeplot.cca
screeplot.prcomp	screeplot.cca
screeplot.princomp	screeplot.cca
showvarparts	varpart
sigma.cca	influence.cca
simmat	nullmodel
simper	simper
simpleDBRDA	varpart
simpleRDA2	varpart
simpson.unb	diversity
simulate.capscale	simulate.rda
simulate.cca	simulate.rda
simulate.nullmodel	nullmodel
simulate.rda	simulate.rda
sipoo	sipoo
sipoo.map	sipoo
smbind	nullmodel
spandepth	spantree
spantree	spantree
specaccum	specaccum
specnumber	diversity
specpool	specpool
specpool2vect	specpool
specslope	specaccum
spenvcor	goodness.cca
sppscores	sppscores
sppscores<-	sppscores
sppscores<-.capscale	sppscores
sppscores<-.dbrda	sppscores
sppscores<-.metaMDS	sppscores
SSarrhenius	SSarrhenius
SSD.cca	influence.cca
SSgitay	SSarrhenius
SSgleason	SSarrhenius
SSlomolino	SSarrhenius
stepacross	stepacross
str.nullmodel	nullmodel
stressplot	goodness.metaMDS
stressplot.capscale	stressplot.wcmdscale
stressplot.cca	stressplot.wcmdscale
stressplot.dbrda	stressplot.wcmdscale
stressplot.default	goodness.metaMDS
stressplot.monoMDS	goodness.metaMDS
stressplot.prcomp	stressplot.wcmdscale
stressplot.princomp	stressplot.wcmdscale
stressplot.rda	stressplot.wcmdscale
stressplot.wcmdscale	stressplot.wcmdscale
summary.anosim	anosim
summary.bioenv	bioenv
summary.cca	plot.cca
summary.clamtest	clamtest
summary.decorana	decorana
summary.dispweight	dispweight
summary.eigenvals	eigenvals
summary.isomap	isomap
summary.meandist	mrpp
summary.ordiellipse	ordihull
summary.ordihull	ordihull
summary.permat	permatfull
summary.permustats	permustats
summary.poolaccum	specpool
summary.prc	prc
summary.procrustes	procrustes
summary.radfit.frame	radfit
summary.simper	simper
summary.specaccum	specaccum
summary.taxondive	taxondive
swan	beals
tabasco	vegemite
tail.summary.cca	plot.cca
taxa2dist	taxondive
taxondive	taxondive
text.cca	plot.cca
text.decorana	decorana
text.metaMDS	metaMDS
text.monoMDS	monoMDS
text.ordiplot	ordiplot
text.orditkplot	orditkplot
text.procrustes	procrustes
tolerance	tolerance
tolerance.cca	tolerance
treedist	treedive
treedive	treedive
treeheight	treedive
tsallis	tsallis
tsallisaccum	tsallis
TukeyHSD.betadisper	betadisper
update.nullmodel	nullmodel
varechem	varechem
varespec	varechem
varpart	varpart
varpart2	varpart
varpart3	varpart
varpart4	varpart
vcov.cca	influence.cca
vectorfit	envfit
vegan	vegan-package
vegan-defunct	vegan-defunct
vegan-deprecated	vegan-deprecated
vegan-internal	vegan-internal
veganCovEllipse	vegan-internal
vegandocs	vegan-defunct
veganMahatrans	vegan-internal
vegdist	vegdist
vegemite	vegemite
veiledspec	fisherfit
vif.cca	goodness.cca
wascores	wascores
wcmdscale	wcmdscale
weights.cca	cca.object
weights.decorana	cca.object
weights.rda	cca.object
wisconsin	decostand
