# Learning Sparse Log-Ratios for Compositional Data

## Documentation for package ‘codacore’ version 0.0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

activeInputs.codacore | activeInputs
codacore | codacore
Crohn | Microbiome composition related to Crohn's disease study
FranzosaMetabolite | Metabolite relative abundances (Franzosa et al., 2019)
FranzosaMicrobiome | Micriobiome relative abundances (Franzosa et al., 2019)
getBinaryPartitions | getBinaryPartitions
getDenominatorParts | getDenominatorParts
getLogRatios | getLogRatios
getNumeratorParts | getNumeratorParts
getNumLogRatios | getNumLogRatios
getSlopes | getSlopes
getTidyTable | getTidyTable
HIV | Microbiome, HIV infection and MSM factor
plot.codacore | plot
plotROC | plotROC
predict.codacore | predict
print.codacore | print
sCD14 | Microbiome and sCD14 inflammation parameter
simulateHTS | simulateHTS