Package: dynplot
Type: Package
Title: Visualising Single-Cell Trajectories
Version: 1.1.2
Authors@R: 
    c(person(given = "Robrecht",
             family = "Cannoodt",
             role = c("aut", "cre", "cph"),
             email = "rcannood@gmail.com",
             comment = c(ORCID = "0000-0003-3641-729X")),
      person(given = "Wouter",
             family = "Saelens",
             role = "aut",
             email = "wouter.saelens@ugent.be",
             comment = c(ORCID = "0000-0002-7114-6248")))
Description: Visualise a single-cell trajectory as a graph or dendrogram, 
  as a dimensionality reduction or heatmap of the expression data, 
  or a comparison between two trajectories as a pairwise scatterplot
  or dimensionality reduction projection. Saelens and Cannoodt et
  al. (2019) <doi:10.1038/s41587-019-0071-9>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/dynverse/dynplot
BugReports: https://github.com/dynverse/dynplot/issues
Depends: R (>= 3.0.0)
Imports: assertthat, dplyr, dynutils (>= 1.0.2), dynfeature (>= 1.0.0),
        dyndimred (>= 1.0.0), dynwrap (>= 1.0.0), GA, ggforce, ggplot2
        (>= 3.0), ggraph (>= 2.0), ggrepel, igraph, MASS, methods,
        patchwork, purrr, reshape2, tibble, tidyr, tidygraph, vipor
Suggests: covr, hexbin, knitr, RColorBrewer, rje, rmarkdown, testthat
        (>= 3.0.0), uwot
VignetteBuilder: knitr
Collate: 'milestone_palette.R' 'add_milestone_coloring.R'
        'add_cell_coloring.R' 'add_density_coloring.R' 'data.R'
        'dummy_proofing.R' 'expect_ggplot.R' 'is_colour_vector.R'
        'linearise_cells.R' 'mix_colors.R' 'optimize_order.R'
        'package.R' 'plot_dendro.R' 'project_waypoints.R'
        'plot_dimred.R' 'plot_edge_flips.R' 'plot_graph.R'
        'plot_heatmap.R' 'plot_linearised_comparison.R' 'plot_onedim.R'
        'plot_strip.R' 'plot_topology.R' 'theme_clean.R'
NeedsCompilation: no
Packaged: 2021-12-07 18:43:16 UTC; rcannood
Author: Robrecht Cannoodt [aut, cre, cph]
    (<https://orcid.org/0000-0003-3641-729X>),
  Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-07 19:00:02 UTC
Built: R 4.1.3; ; 2023-04-17 19:59:40 UTC; windows
