Package: ggcoverage
Type: Package
Title: Visualize Genome Coverage with Various Annotations
Version: 0.7.1
Authors@R: 
    person(given = "Yabing",
           family = "Song",
           role = c("aut", "cre"),
           email = "songyb0519@gmail.com")
Maintainer: Yabing Song <songyb0519@gmail.com>
Description: The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to 
    load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to 
    the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
Imports: dplyr, GenomicRanges, ggbio, ggh4x, ggplot2, ggrepel,
        grDevices, IRanges, magrittr, patchwork, RColorBrewer, rlang,
        Rsamtools, rtracklayer, scales, stats, utils, methods,
        GenomeInfoDb, S4Vectors, Biostrings, BSgenome,
        GenomicAlignments, reshape2, seqinr
Suggests: rmarkdown, knitr, BiocStyle, htmltools,
        BSgenome.Hsapiens.UCSC.hg19, graphics
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-09-06 02:13:41 UTC; songyabing
Author: Yabing Song [aut, cre]
Repository: CRAN
Date/Publication: 2022-09-06 02:50:02 UTC
Built: R 4.1.3; ; 2023-04-17 18:33:46 UTC; windows
