Package: ggmotif
Type: Package
Title: Extract and Visualize Motif Information from MEME Software
Version: 0.2.1
Author: Xiang LI
Maintainer: Xiang LI <lixiang117423@foxmail.com>
Description: Extract and visualize motif information from XML file from MEME software. 
    In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread 
    and usually assumed to be related to specifical biological functions. 
    There exist many software was used to discover motif sequences from a set of nucleotide 
    or amino acid sequences. MEME is almost the most used software to detect motif. 
    It's difficult for biologists to extract and visualize the location of a motif 
    on sequences from the results from MEME software.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree,
        ape, patchwork, ggseqlogo, memes, universalmotif, treeio,
        cowplot, ggsci, data.table
RoxygenNote: 7.2.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-08-10 19:55:01 UTC; xiang
Repository: CRAN
Date/Publication: 2022-08-11 10:30:05 UTC
Built: R 4.1.3; ; 2023-04-17 20:00:37 UTC; windows
