# Infectious Disease Model Library and Utilities

## Documentation for package ‘idmodelr’ version 0.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_pointer_struct | Adds Pointer Structure to R objects
aggregate_model | A Function to Apply Multiple Aggregations to Model Output
aggregate_model_internal | An Internal Function to Aggregate Model Output Using other Idmodelr functions.
combine_strat_model_output | Reduces the Dimensionality of a Stratified Model
combine_to_age_model | Combine an Infectious Disease Model To a Demographic Model
estimate_norm_dist_from_ci | A Function to Estimate a Normal Distribution from Credible or Confidence Intervals
gather_strat_multi_variable | A Function to Gather Multiple Stratified Variables into a Tidy Format
gather_strat_variable | A Function to Gather a Stratified Variable into a Tidy Format
generate_parameter_permutations | A Function to Generate Parameter Permutations
model_details | Model Details
model_df_to_vector | Extracts a Single Column, Summarises if from Simulation
parameter_details | Parameter Details
plot_model | Plot Compartment Populations over Time for a Model Simulation
required_parameters | Lookup the Details of Parameters Required by a Model
scenario_analysis | A Function to Perform Scenario Analysis for a Generic Model Object.
SEIRS_demographics_ode | Susceptible-Exposed-Infected-Recovered-Susceptible Model with Simple Demographics
SEIRS_ode | Susceptible-Exposed-Infected-Recovered-Susceptible Model
SEIR_demographics_ode | Susceptible-Exposed-Infected-Recovered Model with Simple Demographics
SEIR_ode | Susceptible-Exposed-Infected-Recovered Model
SEIS_demographics_ode | Susceptible-Exposed-Infected-Susceptible Model with Simple Demographics
SEIS_ode | Susceptible-Exposed-Infected-Susceptible Model
SEI_demographics_ode | Susceptible-Exposed-Infected Model with Simple Demographics
SEI_ode | Susceptible-Exposed-Infected Model
SHLIR_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered Model with Simple Demographics
SHLIR_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered Model
SHLITR_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered Model with Simple Demographics
SHLITR_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered Model
SHLITR_risk_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered Model with Demographics, Stratified by Risk
SHLITR_risk_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered Model, Stratified by Risk
simulate_model | A Function to Simulate a Model from a Generic Simulation Function, with Pre and Post Processing
SIRS_demographics_ode | Susceptible-Infected-Recovered-Susceptible Model with Simple Demographics
SIRS_ode | Susceptible-Infected-Recovered-Susceptible Model
SIRS_vaccination_demographics_ode | Susceptible-Infected-Recovered-Susceptible Model with Simple Demographics and Vaccination
SIRS_vaccination_ode | Susceptible-Infected-Recovered-Susceptible Model with Vaccination
SIR_demographics_ode | Susceptible-Infected-Recovered Model with Simple Demographics
SIR_ode | Susceptible-Infected-Recovered Model
SIR_vaccination_demographics_ode | Susceptible-Infected-Recovered Model with Simple Demographics and Vaccination
SIR_vaccination_ode | Susceptible-Infected-Recovered Model with Vaccination
SIS_demographics_ode | Susceptible-Infected-Susceptible Model with Simple Demographics
SIS_ode | Susceptible-Infected-Susceptible Model
SI_demographics_ode | Susceptible-Infected Model with Simple Demographics
SI_ode | Susceptible-Infected Model
solve_ode | A Simple Wrapper for lsoda
summarise_model | Summarise a Model Simulation
summarise_strat_var | Sum a Stratified Variable
summarise_var_by_strat | Sum a Stratified Variable by Stratification Level