.quant_column_choice	dot-quant_column_choice
AA_PROP	aa_properties
aa_prop	aa_properties
aa_properties	aa_properties
AA_TABLE	aa_table
aa_table	aa_table
AA_TABLE_REVERSED	aa_table
add_class	add_class
add_pb	set_pb
apply_asymm	apply_symm
apply_symm	apply_symm
ATCHLEY	aa_properties
atchley	aa_properties
bunch_translate	bunch_translate
chao1	repDiversity
check_distribution	check_distribution
clonal.prop	repClonality
clonality	repClonality
clonal_proportion	repClonality
clonal_space_homeostasis	repClonality
coding	coding
cross_entropy	entropy
dbAnnotate	dbAnnotate
dbLoad	dbLoad
diversity_eco	repDiversity
entropy	entropy
exclude	repFilter
filter_by_clonotype	repFilter
filter_by_meta	repFilter
filter_by_repertoire	repFilter
filter_table	repFilter
fixVis	fixVis
genes	gene_segments
geneUsage	geneUsage
geneUsageAnalysis	geneUsageAnalysis
GENE_SEGMENTS	gene_segments
gene_segments	gene_segments
gene_stats	gene_stats
get.kmers	getKmers
getKmers	getKmers
get_aliases	geneUsage
get_genes	geneUsage
gini_coef	repDiversity
gini_simpson	repDiversity
group_from_metadata	group_from_metadata
has_class	has_class
hill_numbers	repDiversity
immdata	immdata
immunarch_data_format	immunr_data_format
immunr_data_format	immunr_data_format
immunr_dbscan	immunr_hclust
immunr_hclust	immunr_hclust
immunr_kmeans	immunr_hclust
immunr_mds	immunr_pca
immunr_pca	immunr_pca
immunr_tsne	immunr_pca
include	repFilter
inc_overlap	inc_overlap
inframes	coding
interval	repFilter
inverse_simpson	repDiversity
js_div	entropy
KIDERA	aa_properties
kidera	aa_properties
kl_div	entropy
kmer_profile	split_to_kmers
lessthan	repFilter
makeKmerTable	getKmers
matrixdiagcopy	matrixdiagcopy
morethan	repFilter
noncoding	coding
outofframes	coding
process_col_argument	switch_type
properties	aa_properties
publicRepertoire	pubRep
publicRepertoireApply	pubRepApply
publicRepertoireFilter	pubRepFilter
public_matrix	public_matrix
pubRep	pubRep
pubRepApply	pubRepApply
pubRepFilter	pubRepFilter
pubRepStatistics	pubRepStatistics
rarefaction	repDiversity
rare_proportion	repClonality
repClonality	repClonality
repDiversity	repDiversity
repExplore	repExplore
repFilter	repFilter
repLoad	repLoad
repOverlap	repOverlap
repOverlapAnalysis	repOverlapAnalysis
repSample	repSample
repSave	repSave
scdata	scdata
segments	gene_segments
select_barcodes	select_barcodes
select_clusters	select_clusters
set_pb	set_pb
spectratype	spectratype
split_to_kmers	split_to_kmers
startswith_rows	repFilter
substring_rows	repFilter
switch_type	switch_type
top	top
top_proportion	repClonality
trackClonotypes	trackClonotypes
translate_bunch	bunch_translate
validate_input_data	repFilter
vis	vis
vis.immunr_chao1	vis.immunr_chao1
vis.immunr_clonal_prop	vis.immunr_clonal_prop
vis.immunr_dbscan	vis.immunr_kmeans
vis.immunr_div	vis.immunr_chao1
vis.immunr_dxx	vis.immunr_chao1
vis.immunr_dynamics	vis.immunr_dynamics
vis.immunr_exp_clones	vis.immunr_exp_vol
vis.immunr_exp_count	vis.immunr_exp_vol
vis.immunr_exp_len	vis.immunr_exp_vol
vis.immunr_exp_vol	vis.immunr_exp_vol
vis.immunr_gene_usage	vis.immunr_gene_usage
vis.immunr_ginisimp	vis.immunr_chao1
vis.immunr_gu_matrix	vis.immunr_ov_matrix
vis.immunr_hclust	vis.immunr_hclust
vis.immunr_hill	vis.immunr_chao1
vis.immunr_homeo	vis.immunr_clonal_prop
vis.immunr_inc_overlap	vis.immunr_inc_overlap
vis.immunr_invsimp	vis.immunr_chao1
vis.immunr_kmeans	vis.immunr_kmeans
vis.immunr_kmer_table	vis.immunr_kmer_table
vis.immunr_mds	vis.immunr_mds
vis.immunr_ov_matrix	vis.immunr_ov_matrix
vis.immunr_pca	vis.immunr_mds
vis.immunr_public_repertoire	vis.immunr_public_repertoire
vis.immunr_public_statistics	vis.immunr_public_statistics
vis.immunr_rarefaction	vis.immunr_chao1
vis.immunr_tail_prop	vis.immunr_clonal_prop
vis.immunr_top_prop	vis.immunr_clonal_prop
vis.immunr_tsne	vis.immunr_mds
vis_bar	vis_bar
vis_box	vis_box
vis_circos	vis_circos
vis_heatmap	vis_heatmap
vis_heatmap2	vis_heatmap2
vis_hist	vis_hist
vis_immunr_kmer_profile_main	vis_immunr_kmer_profile_main
vis_public_clonotypes	vis_public_clonotypes
vis_public_frequencies	vis_public_frequencies
vis_seqlogo	vis_textlogo
vis_textlogo	vis_textlogo
