# Bayesian Latent Gaussian Modelling using INLA and Extensions

## Documentation for package ‘inlabru’ version 2.7.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A B C D E F G I L M P R S T V misc

## -- A --

as.bru_options | Create or update an options objects

## -- B --

bincount | 1D LGCP bin count simulation and comparison with data
bm_list | Methods for mapper lists
bru | Convenient model fitting using (iterated) INLA
bru_call_options | Additional bru options
bru_component | Latent model component construction
bru_component_list | Methods for inlabru component lists
bru_compute_linearisation | Compute inlabru model linearisation information
bru_compute_linearisation.bru_like | Compute inlabru model linearisation information
bru_compute_linearisation.bru_like_list | Compute inlabru model linearisation information
bru_compute_linearisation.bru_model | Compute inlabru model linearisation information
bru_compute_linearisation.component | Compute inlabru model linearisation information
bru_convergence_plot | Plot inlabru convergence diagnostics
bru_fill_missing | Fill in missing values in Spatial grids
bru_forward_transformation | Transformation tools
bru_get_mapper | Extract mapper information from INLA model component objects
bru_get_mapper.inla.rgeneric | Extract mapper information from INLA model component objects
bru_get_mapper.inla.spde | Extract mapper information from INLA model component objects
bru_get_mapper_safely | Extract mapper information from INLA model component objects
bru_info | Methods for bru_info objects
bru_info.bru | Methods for bru_info objects
bru_info.character | Methods for bru_info objects
bru_inverse_transformation | Transformation tools
bru_log | inlabru log message methods
bru_log_active | inlabru log message methods
bru_log_get | inlabru log message methods
bru_log_message | inlabru log message methods
bru_log_reset | inlabru log message methods
bru_make_stack | Build an inla data stack from linearisation information
bru_make_stack.bru_like | Build an inla data stack from linearisation information
bru_make_stack.bru_like_list | Build an inla data stack from linearisation information
bru_mapper | Constructors for 'bru_mapper' objects
bru_mapper.default | Constructors for 'bru_mapper' objects
bru_mapper.inla.mesh | Constructors for 'bru_mapper' objects
bru_mapper.inla.mesh.1d | Constructors for 'bru_mapper' objects
bru_mapper_aggregate | Constructors for 'bru_mapper' objects
bru_mapper_collect | Constructors for 'bru_mapper' objects
bru_mapper_const | Constructors for 'bru_mapper' objects
bru_mapper_define | Constructors for 'bru_mapper' objects
bru_mapper_factor | Constructors for 'bru_mapper' objects
bru_mapper_generics | Generic methods for bru_mapper objects
bru_mapper_harmonics | Constructors for 'bru_mapper' objects
bru_mapper_index | Constructors for 'bru_mapper' objects
bru_mapper_linear | Constructors for 'bru_mapper' objects
bru_mapper_logsumexp | Constructors for 'bru_mapper' objects
bru_mapper_matrix | Constructors for 'bru_mapper' objects
bru_mapper_methods | Methods for bru_mapper objects
bru_mapper_multi | Constructors for 'bru_mapper' objects
bru_mapper_offset | Deprecated functions in inlabru
bru_mapper_pipe | Constructors for 'bru_mapper' objects
bru_mapper_scale | Constructors for 'bru_mapper' objects
bru_mapper_taylor | Constructors for 'bru_mapper' objects
bru_options | Create or update an options objects
bru_options_check | Create or update an options objects
bru_options_default | Create or update an options objects
bru_options_get | Create or update an options objects
bru_options_reset | Create or update an options objects
bru_options_set | Create or update an options objects
bru_rerun | Convenient model fitting using (iterated) INLA
bru_safe_inla | Load INLA safely for examples and tests
bru_standardise_names | Standardise inla hyperparameter names
bru_summarise | Summarise and annotate data
bru_transformation | Transformation tools

## -- C --

c.bm_list | Methods for mapper lists
c.bru_mapper | Methods for mapper lists
c.component | Methods for inlabru component lists
c.component_list | Methods for inlabru component lists
component | Latent model component construction
component.character | Latent model component construction
component_eval | Evaluate component values in predictor expressions
component_list | Methods for inlabru component lists
component_list.formula | Methods for inlabru component lists
component_list.list | Methods for inlabru component lists
countdata1 | 1-Dimensional Homogeneous Poisson example.
countdata2 | 1-Dimensional NonHomogeneous Poisson example.
countdata3a | 1-Dimensional NonHomogeneous Poisson example.
countdata3b | 1-Dimensional NonHomogeneous Poisson example.
cov2_1D | 1-Dimensional NonHomogeneous Poisson example.
cprod | Cross product of integration points

## -- D --

deltaIC | Summarise DIC and WAIC from 'lgcp' objects.
devel.cvmeasure | Variance and correlations measures for prediction components

## -- E --

evaluate_comp_lin | Compute all component linearisations
evaluate_index | Compute all index values
evaluate_inputs | Compute all component inputs
eval_spatial | Evaluate spatial covariates
eval_spatial.Spatial | Evaluate spatial covariates
eval_spatial.SpatRaster | Evaluate spatial covariates
eval_SpatialDF | Deprecated functions in inlabru
expand_labels | Expand labels
E_nc1 | 1-Dimensional Homogeneous Poisson example.
E_nc2 | 1-Dimensional NonHomogeneous Poisson example.
E_nc3a | 1-Dimensional NonHomogeneous Poisson example.
E_nc3b | 1-Dimensional NonHomogeneous Poisson example.

## -- F --

fm_as_inla_mesh | Coercion methods to and from meshes
fm_as_inla_mesh.sf | Coercion methods to and from meshes
fm_as_inla_mesh.sfc_MULTIPOLYGON | Coercion methods to and from meshes
fm_as_inla_mesh_segment | Coercion methods to and from meshes
fm_as_inla_mesh_segment.Line | Coercion methods to and from meshes
fm_as_inla_mesh_segment.Lines | Coercion methods to and from meshes
fm_as_inla_mesh_segment.matrix | Coercion methods to and from meshes
fm_as_inla_mesh_segment.Polygon | Coercion methods to and from meshes
fm_as_inla_mesh_segment.Polygons | Coercion methods to and from meshes
fm_as_inla_mesh_segment.sf | Coercion methods to and from meshes
fm_as_inla_mesh_segment.sfc_LINESTRING | Coercion methods to and from meshes
fm_as_inla_mesh_segment.sfc_POINT | Coercion methods to and from meshes
fm_as_inla_mesh_segment.sfc_POLYGON | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialLines | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialLinesDataFrame | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialPoints | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialPointsDataFrame | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialPolygons | Coercion methods to and from meshes
fm_as_inla_mesh_segment.SpatialPolygonsDataFrame | Coercion methods to and from meshes
fm_as_sfc | Coercion methods to and from meshes
fm_as_sfc.inla.mesh | Coercion methods to and from meshes
fm_as_sp_crs | Coercion methods to and from meshes
fm_CRS | Create a coordinate reference system object
fm_crs | Obtain coordinate reference system object
fm_crs.character | Obtain coordinate reference system object
fm_CRS.CRS | Create a coordinate reference system object
fm_CRS.crs | Create a coordinate reference system object
fm_CRS.default | Create a coordinate reference system object
fm_crs.default | Obtain coordinate reference system object
fm_CRS.fm_crs | Create a coordinate reference system object
fm_crs.fm_crs | Obtain coordinate reference system object
fm_CRS.inla.CRS | Create a coordinate reference system object
fm_crs.inla.CRS | Obtain coordinate reference system object
fm_CRS.inla.mesh | Create a coordinate reference system object
fm_crs.inla.mesh | Obtain coordinate reference system object
fm_CRS.inla.mesh.lattice | Create a coordinate reference system object
fm_crs.inla.mesh.lattice | Obtain coordinate reference system object
fm_crs.inla.mesh.segment | Obtain coordinate reference system object
fm_CRS.inla.segment | Create a coordinate reference system object
fm_CRS.sf | Create a coordinate reference system object
fm_crs.sf | Obtain coordinate reference system object
fm_CRS.sfc | Create a coordinate reference system object
fm_crs.sfc | Obtain coordinate reference system object
fm_CRS.sfg | Create a coordinate reference system object
fm_crs.sfg | Obtain coordinate reference system object
fm_CRS.Spatial | Create a coordinate reference system object
fm_crs.Spatial | Obtain coordinate reference system object
fm_crs.SpatRaster | Obtain coordinate reference system object
fm_crs.SpatVector | Obtain coordinate reference system object
fm_crs_get_ellipsoid_radius | Handling CRS/WKT
fm_crs_get_lengthunit | Handling CRS/WKT
fm_crs_get_wkt | Handling CRS/WKT
fm_crs_is_geocent | Handling CRS/WKT
fm_crs_oblique | Obtain coordinate reference system object
fm_crs_oblique<- | Obtain coordinate reference system object
fm_crs_set_ellipsoid_radius | Handling CRS/WKT
fm_crs_set_lengthunit | Handling CRS/WKT
fm_crs_wkt | Handling CRS/WKT
fm_ellipsoid_radius | Handling CRS/WKT
fm_ellipsoid_radius.character | Handling CRS/WKT
fm_ellipsoid_radius.default | Handling CRS/WKT
fm_ellipsoid_radius<- | Handling CRS/WKT
fm_ellipsoid_radius<-.character | Handling CRS/WKT
fm_ellipsoid_radius<-.CRS | Handling CRS/WKT
fm_ellipsoid_radius<-.crs | Handling CRS/WKT
fm_ellipsoid_radius<-.fm_crs | Handling CRS/WKT
fm_ellipsoid_radius<-.inla.CRS | Handling CRS/WKT
fm_evaluate | Methods for projecting to/from an inla.mesh
fm_evaluate.fm_evaluator | Methods for projecting to/from an inla.mesh
fm_evaluate.inla.mesh | Methods for projecting to/from an inla.mesh
fm_evaluate.inla.mesh.1d | Methods for projecting to/from an inla.mesh
fm_evaluator | Methods for projecting to/from an inla.mesh
fm_evaluator.inla.mesh | Methods for projecting to/from an inla.mesh
fm_evaluator.inla.mesh.1d | Methods for projecting to/from an inla.mesh
fm_evaluator_inla_mesh | Methods for projecting to/from an inla.mesh
fm_evaluator_inla_mesh_1d | Methods for projecting to/from an inla.mesh
fm_evaluator_lattice | Methods for projecting to/from an inla.mesh
fm_fallback_PROJ6 | PROJ6 detection
fm_has_PROJ6 | PROJ6 detection
fm_length_unit | Handling CRS/WKT
fm_length_unit.character | Handling CRS/WKT
fm_length_unit.default | Handling CRS/WKT
fm_length_unit<- | Handling CRS/WKT
fm_length_unit<-.character | Handling CRS/WKT
fm_length_unit<-.CRS | Handling CRS/WKT
fm_length_unit<-.crs | Handling CRS/WKT
fm_length_unit<-.fm_crs | Handling CRS/WKT
fm_length_unit<-.inla.CRS | Handling CRS/WKT
fm_not_for_PROJ4 | PROJ6 detection
fm_not_for_PROJ6 | PROJ6 detection
fm_requires_PROJ6 | PROJ6 detection
fm_sp2segment | Coercion methods to and from meshes
fm_spTransform | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.default | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.inla.mesh | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.inla.mesh.lattice | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.inla.mesh.segment | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.SpatialPoints | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_spTransform.SpatialPointsDataFrame | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class.
fm_sp_get_crs | Extract CRS information
fm_transform | Object coordinate transformation
fm_transform.default | Object coordinate transformation
fm_transform.inla.mesh | Object coordinate transformation
fm_transform.inla.mesh.lattice | Object coordinate transformation
fm_transform.inla.mesh.segment | Object coordinate transformation
fm_transform.list | Object coordinate transformation
fm_transform.matrix | Object coordinate transformation
fm_transform.sf | Object coordinate transformation
fm_transform.sfc | Object coordinate transformation
fm_transform.sfg | Object coordinate transformation
fm_transform.Spatial | Object coordinate transformation
fm_wkt | Handling CRS/WKT
fm_wkt_as_wkt_tree | Internal WKT handling
fm_wkt_get_ellipsoid_radius | Handling CRS/WKT
fm_wkt_get_lengthunit | Handling CRS/WKT
fm_wkt_is_geocent | Handling CRS/WKT
fm_wkt_predef | Obtain coordinate reference system object
fm_wkt_set_ellipsoid_radius | Handling CRS/WKT
fm_wkt_set_lengthunit | Handling CRS/WKT
fm_wkt_tree_as_wkt | Internal WKT handling
fm_wkt_tree_get_item | Internal WKT handling
fm_wkt_tree_set_item | Internal WKT handling
fm_wkt_unit_params | Handling CRS/WKT

## -- G --

generate | Generate samples from fitted bru models
generate.bru | Generate samples from fitted bru models
gg | ggplot2 geomes for inlabru related objects
gg.data.frame | Geom for data.frame
gg.inla.mesh | Geom for inla.mesh objects
gg.inla.mesh.1d | Geom for inla.mesh.1d objects
gg.matrix | Geom for matrix
gg.prediction | Geom for predictions
gg.RasterLayer | Geom for RasterLayer objects
gg.SpatialGridDataFrame | Geom for SpatialGridDataFrame objects
gg.SpatialLines | Geom for SpatialLines objects
gg.SpatialPixels | Geom for SpatialPixels objects
gg.SpatialPixelsDataFrame | Geom for SpatialPixelsDataFrame objects
gg.SpatialPoints | Geom for SpatialPoints objects
gg.SpatialPolygons | Geom for SpatialPolygons objects
globe | Plot a globe using rgl
glplot | Render Spatial* and inla.mesh objects using RGL
glplot.inla.mesh | Visualize SpatialPoints using RGL
glplot.SpatialLines | Visualize SpatialLines using RGL
glplot.SpatialPoints | Visualize SpatialPoints using RGL
gm | ggplot geom for spatial data
gmap | Plot a map using extent of a spatial object
gorillas | Gorilla nesting sites

## -- I --

ibm_amatrix | Generic methods for bru_mapper objects
ibm_amatrix.bru_mapper_collect | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_factor | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_index | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_inla_mesh_1d | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_inla_mesh_2d | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_linear | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_matrix | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_multi | Deprecated functions in inlabru
ibm_amatrix.bru_mapper_offset | Deprecated functions in inlabru
ibm_amatrix.default | Generic methods for bru_mapper objects
ibm_eval | Generic methods for bru_mapper objects
ibm_eval.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_eval.bru_mapper_collect | Methods for bru_mapper objects
ibm_eval.bru_mapper_const | Methods for bru_mapper objects
ibm_eval.bru_mapper_logsumexp | Methods for bru_mapper objects
ibm_eval.bru_mapper_multi | Methods for bru_mapper objects
ibm_eval.bru_mapper_pipe | Methods for bru_mapper objects
ibm_eval.bru_mapper_scale | Methods for bru_mapper objects
ibm_eval.bru_mapper_taylor | Methods for bru_mapper objects
ibm_eval.default | Generic methods for bru_mapper objects
ibm_inla_subset | Generic methods for bru_mapper objects
ibm_inla_subset.default | Generic methods for bru_mapper objects
ibm_invalid_output | Generic methods for bru_mapper objects
ibm_invalid_output.bru_mapper_collect | Methods for bru_mapper objects
ibm_invalid_output.bru_mapper_index | Methods for bru_mapper objects
ibm_invalid_output.bru_mapper_multi | Methods for bru_mapper objects
ibm_invalid_output.default | Generic methods for bru_mapper objects
ibm_is_linear | Generic methods for bru_mapper objects
ibm_is_linear.bru_mapper_collect | Methods for bru_mapper objects
ibm_is_linear.bru_mapper_multi | Methods for bru_mapper objects
ibm_is_linear.default | Generic methods for bru_mapper objects
ibm_jacobian | Generic methods for bru_mapper objects
ibm_jacobian.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_collect | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_const | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_factor | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_harmonics | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_index | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_inla_mesh_1d | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_inla_mesh_2d | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_linear | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_logsumexp | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_matrix | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_multi | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_pipe | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_scale | Methods for bru_mapper objects
ibm_jacobian.bru_mapper_taylor | Methods for bru_mapper objects
ibm_jacobian.default | Generic methods for bru_mapper objects
ibm_linear | Generic methods for bru_mapper objects
ibm_linear.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_linear.bru_mapper_collect | Methods for bru_mapper objects
ibm_linear.bru_mapper_logsumexp | Methods for bru_mapper objects
ibm_linear.bru_mapper_multi | Methods for bru_mapper objects
ibm_linear.bru_mapper_pipe | Methods for bru_mapper objects
ibm_linear.bru_mapper_scale | Methods for bru_mapper objects
ibm_linear.default | Generic methods for bru_mapper objects
ibm_n | Generic methods for bru_mapper objects
ibm_n.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_n.bru_mapper_collect | Methods for bru_mapper objects
ibm_n.bru_mapper_const | Methods for bru_mapper objects
ibm_n.bru_mapper_factor | Methods for bru_mapper objects
ibm_n.bru_mapper_harmonics | Methods for bru_mapper objects
ibm_n.bru_mapper_inla_mesh_1d | Methods for bru_mapper objects
ibm_n.bru_mapper_inla_mesh_2d | Methods for bru_mapper objects
ibm_n.bru_mapper_linear | Methods for bru_mapper objects
ibm_n.bru_mapper_matrix | Methods for bru_mapper objects
ibm_n.bru_mapper_multi | Methods for bru_mapper objects
ibm_n.bru_mapper_offset | Deprecated functions in inlabru
ibm_n.bru_mapper_pipe | Methods for bru_mapper objects
ibm_n.bru_mapper_scale | Methods for bru_mapper objects
ibm_n.bru_mapper_taylor | Methods for bru_mapper objects
ibm_n.default | Generic methods for bru_mapper objects
ibm_names | Generic methods for bru_mapper objects
ibm_names.bru_mapper_collect | Methods for bru_mapper objects
ibm_names.bru_mapper_multi | Methods for bru_mapper objects
ibm_names.default | Generic methods for bru_mapper objects
ibm_names<- | Generic methods for bru_mapper objects
ibm_names<-.bru_mapper_collect | Methods for bru_mapper objects
ibm_names<-.bru_mapper_multi | Methods for bru_mapper objects
ibm_n_output | Generic methods for bru_mapper objects
ibm_n_output.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_n_output.bru_mapper_collect | Methods for bru_mapper objects
ibm_n_output.bru_mapper_multi | Methods for bru_mapper objects
ibm_n_output.bru_mapper_pipe | Methods for bru_mapper objects
ibm_n_output.bru_mapper_scale | Methods for bru_mapper objects
ibm_n_output.bru_mapper_taylor | Methods for bru_mapper objects
ibm_n_output.default | Generic methods for bru_mapper objects
ibm_valid_input | Deprecated functions in inlabru
ibm_values | Generic methods for bru_mapper objects
ibm_values.bru_mapper_aggregate | Methods for bru_mapper objects
ibm_values.bru_mapper_collect | Methods for bru_mapper objects
ibm_values.bru_mapper_const | Methods for bru_mapper objects
ibm_values.bru_mapper_factor | Methods for bru_mapper objects
ibm_values.bru_mapper_inla_mesh_1d | Methods for bru_mapper objects
ibm_values.bru_mapper_inla_mesh_2d | Methods for bru_mapper objects
ibm_values.bru_mapper_linear | Methods for bru_mapper objects
ibm_values.bru_mapper_matrix | Methods for bru_mapper objects
ibm_values.bru_mapper_multi | Methods for bru_mapper objects
ibm_values.bru_mapper_offset | Deprecated functions in inlabru
ibm_values.bru_mapper_pipe | Methods for bru_mapper objects
ibm_values.bru_mapper_scale | Methods for bru_mapper objects
ibm_values.bru_mapper_taylor | Methods for bru_mapper objects
ibm_values.default | Generic methods for bru_mapper objects
init.tutorial | Deprecated functions in inlabru
inla.stack.mjoin | Join stacks intended to be run with different likelihoods
inlabru | inlabru
inlabru-deprecated | Deprecated functions in inlabru
int | Weighted summation (integration) of data frame subsets
ipoints | Generate integration points

## -- L --

lambda1_1D | 1-Dimensional Homogeneous Poisson example.
lambda2_1D | 1-Dimensional NonHomogeneous Poisson example.
lambda3_1D | 1-Dimensional NonHomogeneous Poisson example.
lgcp | Log Gaussian Cox process (LGCP) inference using INLA
like | Likelihood construction for usage with 'bru()'
like_list | Likelihood construction for usage with 'bru()'
like_list.bru_like | Likelihood construction for usage with 'bru()'
like_list.list | Likelihood construction for usage with 'bru()'

## -- M --

mexdolphin | Pan-tropical spotted dolphins in the Gulf of Mexico
mrsea | Marine renewables strategic environmental assessment
multiplot | Multiple ggplots on a page.

## -- P --

pixels | Generate 'SpatialPixels' covering an 'inla.mesh'
plot.bru | Plot method for posterior marginals estimated by bru
plot.prediction | Plot prediction using ggplot2
plotsample | Create a plot sample.
point2count | Convert a plot sample of points into one of counts.
Poisson1_1D | 1-Dimensional Homogeneous Poisson example.
Poisson2_1D | 1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D | 1-Dimensional NonHomogeneous Poisson example.
predict.bru | Prediction from fitted bru model
print.fm_crs | Obtain coordinate reference system object
print.summary_bru | Summary for an inlabru fit
print.summary_bru_info | Methods for bru_info objects
print.summary_bru_mapper | mapper object summaries
print.summary_bru_options | Print inlabru options
pts1 | 1-Dimensional Homogeneous Poisson example.
pts2 | 1-Dimensional NonHomogeneous Poisson example.
pts3 | 1-Dimensional NonHomogeneous Poisson example.

## -- R --

robins_subset | robins_subset
row_kron | Row-wise Kronecker products

## -- S --

sample.lgcp | Sample from an inhomogeneous Poisson process
seals | Seal pups
shrimp | Blue and red shrimp in the Western Mediterranean Sea
sline | Convert data frame to SpatialLinesDataFrame
spatial.to.ppp | Convert SpatialPoints and boundary polygon to spatstat ppp object
spde.posterior | Posteriors of SPDE hyper parameters and Matern correlation or covariance function.
spoly | Convert a data.frame of boundary points into a SpatialPolgonsDataFrame
stransform | Deprecated functions in inlabru
st_check_dim | Check for "XYZ", "XYM" and "XYZM" sfg classes
st_check_polygon | Check sfg polygon satisfies standards for POLYGON simple features
st_crs.fm_crs | Obtain coordinate reference system object
st_signed_area | Calculate signed area for polygon
summary.bru | Summary for an inlabru fit
summary.bru_info | Methods for bru_info objects
summary.bru_mapper | mapper object summaries
summary.bru_mapper_collect | mapper object summaries
summary.bru_mapper_multi | mapper object summaries
summary.bru_mapper_pipe | mapper object summaries
summary.bru_options | Print inlabru options

## -- T --

toygroups | Simulated 1D animal group locations and group sizes

## -- V --

vertices.inla.mesh | Extract vertex locations from an 'inla.mesh'

## -- misc --

$.fm_crs | Obtain coordinate reference system object
[.bm_list | Methods for mapper lists
[.bru_like_list | Likelihood construction for usage with 'bru()'
[.bru_mapper_collect | Methods for bru_mapper objects
[.bru_mapper_multi | Methods for bru_mapper objects
[.component_list | Methods for inlabru component lists