# Competitive Gene Sets Test with the Mann-Whitney-Wilcoxon Test

## Documentation for package ‘massiveGST’ version 1.2.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cut_by_logit2NES | Trim the table of results.
cut_by_NES | Trim the table of results.
cut_by_significance | Trim the table of results.
geneSets.sim | Compute the similarities between a collection of gene sets.
get_geneProfile | Load a gene-profile from a txt file.
get_geneSets_from_local_files | Load the gene-sets collection from local gmt files
get_geneSets_from_msigdbr | Get the gene-sets from the msigdbr package.
massiveGST | massive Gene-Sets Test with Mann-Whitney-Wilcoxon statistics.
massiveORT | A wrapper to fisher.test to get over representation analysis of gene sets.
plot.mGST | Graphical rendering of the enrichment analysis.
pre_ranked_list | FGFR3-TACC3 fusion positive gene profile
save_as_tsv | Save the results in tab-separeted value file
save_as_xls | Save the results in xls file format
summary.mGST | Generate summary tables
write_geneSets_to_gmt | Save a collection of gene-sets in a .gmt file format.