Package: pulseTD
Type: Package
Title: Identification of Transcriptional Dynamics using Pulse Models
        via 4su-Seq Data and RNA-Seq Data
Version: 0.1.0
Date: 2019-5-5
Author: XinWang
Maintainer: XinWang <xindd_2014@163.com>
Description: A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Metabolic Label 4-thiouridine) data and RNA-seq (RNA sequencing) data. It can not only recognize the transcriptional dynamic rates at the measurement time points, but also obtain continuous changes in transcriptional dynamics. More importantly, it is able to predict the trend of mRNA (Mature RNA) transcription and expression changes in the future.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.4.0)
biocViews:
Imports: AnnotationDbi, SummarizedExperiment, Rsamtools, Biobase,
        S4Vectors, methods, parallel, GenomicFeatures, ggplot2, grid,
        GenomicAlignments
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, TxDb.Hsapiens.UCSC.hg19.knownGene
URL: https://github.com/bioWzz/pulseTD_0.1.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-05-17 01:32:57 UTC; Administrator
Repository: CRAN
Date/Publication: 2019-05-17 09:20:03 UTC
Built: R 4.1.3; ; 2023-04-20 16:55:44 UTC; windows
