CMSTtests               Perform CMST Tests on cross object
GetCandReg              Get genetic information on candidate regulators
                        and co-mapping traits.
GetCommonQtls           Get common QTLs for phenotypes
PrecTpFpMatrix          Determine false positive and true positive
                        rates for known targets.
SimCrossCausal          Simulate Cross for Causal Tests
add.phenos              Add phenotypes to cross object.
filter.threshold        Summary of threshold results
highlod                 Pull high LOD values with chr and pos.
hotperm                 Conduct NL and N permutation tests
hotsize                 Hotspot size routines.
parallel.qtlhot         Code for parallelizing R/qtlhot.
sim.hotspot             Wrapper routine for simulations.
ww.perm                 Conduct West-Wu (Q) permutation tests
