# Searching Shared HLA Amino Acid Residue Prevalence

## Documentation for package ‘SSHAARP’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

AA_atlas | Exon boundaries for all exons in protein coding genes in the IPD-IMGT/HLA Database release v 3.39.0
BLAASD | BLAASD - Build Loci Amino Acid Specific Dataframe
checkMotif | Syntactic and semantic validation of HLA amino acid motifs
dataSubset | Solberg dataset manipulation
findMotif | Returns an alignment data frame of alleles that share a specific amino acid motif
IMGTprotalignments | Protein alignments for all protein coding genes in the IPD-IMGT/HLA Database release v 3.39.0.
PALM | Population Allele Locating Mapmaker
solberg_dataset | Solberg Dataset