Package: bdc
Title: Biodiversity Data Cleaning
Version: 1.1.4
Authors@R: c(
    person("Bruno", "Ribeiro", , "ribeiro.brr@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7755-6715")),
    person("Santiago", "Velazco", , "sjevelazco@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-7527-0967")),
    person("Karlo", "Guidoni-Martins", , "kguidonimartins@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-8458-8467")),
    person("Geiziane", "Tessarolo", , "geites@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0003-1361-0062")),
    person("Lucas", "Jardim", , "lucas.ljardim9@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0003-2602-5575")),
    person("Steven", "Bachman", , "S.Bachman@kew.org ", role = "ctb",
           comment = c(ORCID = "0000-0003-1085-6075")),
    person("Rafael", "Loyola", , "rdiasloyola@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0001-5323-2735"))
  )
Description: It brings together several aspects of biodiversity
    data-cleaning in one place. 'bdc' is organized in thematic modules
    related to different biodiversity dimensions, including 1) Merge
    datasets: standardization and integration of different datasets; 2)
    Pre-filter: flagging and removal of invalid or non-interpretable
    information, followed by data amendments; 3) Taxonomy: cleaning,
    parsing, and harmonization of scientific names from several taxonomic
    groups against taxonomic databases locally stored through the
    application of exact and partial matching algorithms; 4) Space:
    flagging of erroneous, suspect, and low-precision geographic
    coordinates; and 5) Time: flagging and, whenever possible, correction
    of inconsistent collection date. In addition, it contains
    features to visualize, document, and report data quality – which is
    essential for making data quality assessment transparent and
    reproducible. The reference for the methodology is Bruno et al. (2022)
    <doi:10.1111/2041-210X.13868>.
License: GPL (>= 3)
URL: https://brunobrr.github.io/bdc/ (website)
        https://github.com/brunobrr/bdc
BugReports: https://github.com/brunobrr/bdc/issues
Imports: CoordinateCleaner, dplyr, DT, foreach, fs, ggplot2, here,
        magrittr, purrr, qs, readr, rgnparser, rnaturalearth, sf (>=
        1.0.5), stringdist, stringi, stringr, taxadb (>= 0.1.3),
        tibble, tidyselect
Suggests: contentid (>= 0.0.15), covr, cowplot, DBI, doParallel, duckdb
        (>= 0.3.2), knitr (>= 1.31), maps, markdown, rappdirs, raster,
        remotes, rlang (>= 1.0.1), rmarkdown, rnaturalearthdata, rvest,
        sp, testthat (>= 3.0.0), xml2
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-gb
RoxygenNote: 7.2.1
NeedsCompilation: no
Packaged: 2023-03-13 12:42:38 UTC; ribei
Author: Bruno Ribeiro [aut, cre] (<https://orcid.org/0000-0002-7755-6715>),
  Santiago Velazco [aut] (<https://orcid.org/0000-0002-7527-0967>),
  Karlo Guidoni-Martins [aut] (<https://orcid.org/0000-0002-8458-8467>),
  Geiziane Tessarolo [aut] (<https://orcid.org/0000-0003-1361-0062>),
  Lucas Jardim [aut] (<https://orcid.org/0000-0003-2602-5575>),
  Steven Bachman [ctb] (<https://orcid.org/0000-0003-1085-6075>),
  Rafael Loyola [ctb] (<https://orcid.org/0000-0001-5323-2735>)
Maintainer: Bruno Ribeiro <ribeiro.brr@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-13 13:50:05 UTC
Built: R 4.2.3; ; 2024-04-24 03:15:46 UTC; windows
