Package: comradesOO
Type: Package
Title: Analysis of COMRADES (Cross-Linking Matched RNA and Deep
        Sequencing) Data
Version: 0.1.1
Authors@R: c(person("Jonathan", "Price", email="jlp76@cam.ac.uk", role=c("aut","cre")))
Maintainer: Jonathan Price <jlp76@cam.ac.uk>
Description: Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.
License: GPL-3
Encoding: UTF-8
BugReports: https://github.com/JLP-BioInf/comradesOO/issues
Depends: seqinr, GenomicRanges, stats
Imports: ggplot2, reshape2, MASS, mixtools, utils, S4Vectors,
        doParallel, igraph, R4RNA, RColorBrewer, IRanges,
        foreach,grDevices, heatmap3, TopDom, tidyverse, RRNA, ggrepel,
        methods, parallel
RoxygenNote: 7.2.1
Collate: 'comradesOO.R' 'comradesDataSet.R' 'clusterComrades.R'
        'clusterComradesMethodsAndHelpers.R'
        'commonHelpersAndMethods.R' 'commonStatsAndPlots.R'
        'comradesDataSetMethodsAndHelpers.R' 'comradesOO-package.R'
        'foldComrades.R' 'foldComradesMethodsAndHelpers.R'
        'genericMethods.R'
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2023-11-10 12:17:30 UTC; jp
Author: Jonathan Price [aut, cre]
Repository: CRAN
Date/Publication: 2023-11-10 13:00:02 UTC
Built: R 4.2.3; ; 2024-04-24 03:16:43 UTC; windows
