Package: genBaRcode
Title: Analysis and Visualization Tools for Genetic Barcode Data
Version: 1.2.7
Author: Lars Thielecke <lars.thielecke@tu-dresden.de>
Maintainer: Lars Thielecke <lars.thielecke@tu-dresden.de>
Description: Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Depends: R (>= 3.4)
License: LGPL
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Suggests: BiocManager, testthat, knitr, rmarkdown
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph,
        igraph, network, phangorn, stringdist, visNetwork, reshape2,
        S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger,
        future, future.apply, tools, ShortRead, Biostrings
RoxygenNote: 7.2.3
Collate: 'BCdata-class.R' 'BCdata-class-methods.R'
        'analysis_functions.R' 'data.R' 'error_correction_function.R'
        'helper_functions.R' 'plot_functions.R' 'raw_data_processing.R'
NeedsCompilation: no
Packaged: 2023-12-11 11:14:34 UTC; thiella
Repository: CRAN
Date/Publication: 2023-12-11 13:10:05 UTC
Built: R 4.2.3; ; 2024-04-24 03:18:33 UTC; windows
