# Gene Analysis Toolkit

## Documentation for package ‘genekitr’ version 1.2.5

- DESCRIPTION file.

## Help Pages

as.enrichdat | Modify dataframe for enrichment plot
biocOrg_name | Datasets geneList entrez gene list with decreasing fold change value
Datasets | Datasets geneList entrez gene list with decreasing fold change value
deg | Datasets geneList entrez gene list with decreasing fold change value
ensOrg_name | Datasets geneList entrez gene list with decreasing fold change value
expoSheet | Export list of data sets into different 'Excel' sheets
geneList | Datasets geneList entrez gene list with decreasing fold change value
genGSEA | Gene Set Enrichment Analysis
genInfo | Get gene related information
genORA | Gene Over-Representation Enrichment Analysis
getGEO | Get GEO metadata
getPubmed | Get 'PubMed' paper records by searching abstract
hsapiens_probe_platform | Datasets geneList entrez gene list with decreasing fold change value
importCP | Import 'clusterProfiler' result
importPanther | Import 'Panther' web result
importShinygo | Import 'shinyGO' web result
keggOrg_name | Datasets geneList entrez gene list with decreasing fold change value
msig_category | Datasets geneList entrez gene list with decreasing fold change value
msig_org | Datasets geneList entrez gene list with decreasing fold change value
plotEnrich | Plot for gene enrichment analysis of ORA method
plotEnrichAdv | Advanced Plot for gene enrichment analysis of ORA method
plotGSEA | Plot for gene enrichment analysis of GSEA method
plotVenn | Venn plot for groups of genes
plotVolcano | Volcano plot for differential expression analysis
plot_theme | Themes for all plots
simGO | Simplify GO enrichment result
transId | Transform id among symbol, entrezid, ensembl and uniprot.
transProbe | Transform probe id to symbol, entrezid, ensembl or uniprot.