Package: metaGE
Title: Meta-Analysis for Detecting Genotype x Environment Associations
Version: 1.0.3
Authors@R: c(
    person("Annaïg", "De Walsche", , "annaig.de-walsche@inrae.fr", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0603-1716")),
    person("Tristan", "Mary-Huard", , "tristan.mary-huard@agroparistech.fr", role = "aut",
           comment = c(ORCID = "0000-0002-3839-9067"))
  )
Maintainer: Annaïg De Walsche <annaig.de-walsche@inrae.fr>
Description: Meta-analysis of genome-wide association studies for studying
    Genotype x Environment interactions.  The 4 main functions of the
    package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test()
    correspond to 4 steps to perform the meta-analysis: Collecting the
    results of genome-wide association studies data from different files;
    Inferring the inter-environment correlation matrix; Performing global
    test procedure for quantitative trait loci detection (using a Fixed or
    Random effect model); Performing tests of contrast or meta-regression
    using an environmental co-factor. (De Walsche, A., et al. (2023)
    <doi:10.1101/2023.03.01.530237>).
License: GPL-3
Depends: R (>= 3.0.2)
Imports: corrplot, data.table, dplyr, emdbook, future, ggplot2,
        ggrepel, gplots, graphics, grDevices, ks, purrr, qqman, Rfast,
        stats, stringr, tibble, tidyr, utils, viridis
Suggests: DT, knitr, rmarkdown, tidyverse
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
NeedsCompilation: no
Packaged: 2023-09-28 08:31:12 UTC; Annaig
Author: Annaïg De Walsche [aut, cre] (<https://orcid.org/0000-0003-0603-1716>),
  Tristan Mary-Huard [aut] (<https://orcid.org/0000-0002-3839-9067>)
Repository: CRAN
Date/Publication: 2023-09-28 08:50:02 UTC
Built: R 4.2.3; ; 2024-04-24 02:38:59 UTC; windows
