Package: scGOclust
Type: Package
Title: Measuring Cell Type Similarity with Gene Ontology in Single-Cell
        RNA-Seq
Version: 0.2.1
Authors@R: c(person(given = "Yuyao", family = "Song", email = "ysong@ebi.ac.uk", role = c("aut", "cre", "ctb")), person(given = "Irene", family = "Papatheodorou", email = "irenep@ebi.ac.uk", role = c("aut", "ths")))
Description: Traditional methods for analyzing single cell RNA-seq datasets focus solely on gene expression, but this package introduces a novel approach that goes beyond this limitation. Using Gene Ontology terms as features, the package allows for the functional profile of cell populations, and comparison within and between datasets from the same or different species. Our approach enables the discovery of previously unrecognized functional similarities and differences between cell types and has demonstrated success in identifying cell types' functional correspondence even between evolutionarily distant species.
URL: https://github.com/Papatheodorou-Group/scGOclust
BugReports: https://github.com/Papatheodorou-Group/scGOclust/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
RoxygenNote: 7.2.3
Imports: limma, Seurat(>= 5.0.0), biomaRt, dplyr, magrittr, stats,
        tibble, tidyr, Matrix, utils, networkD3, slanter
Suggests: knitr, devtools, pheatmap, rmarkdown, httr
VignetteBuilder: knitr
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2024-01-23 17:05:34 UTC; ysong
Author: Yuyao Song [aut, cre, ctb],
  Irene Papatheodorou [aut, ths]
Maintainer: Yuyao Song <ysong@ebi.ac.uk>
Repository: CRAN
Date/Publication: 2024-01-24 14:40:02 UTC
Built: R 4.2.3; ; 2024-04-24 03:30:19 UTC; windows
