Package: scfetch
Type: Package
Title: Access and Format Single-Cell RNA-Seq Datasets from Public
        Resources
Version: 0.5.0
Authors@R: 
    person(given = "Yabing",
           family = "Song",
           role = c("aut", "cre"),
           email = "songyb0519@gmail.com")
Maintainer: Yabing Song <songyb0519@gmail.com>
Description: The goal of 'scfetch' is to access and format single-cell RNA-seq datasets. It can be used to download single-cell RNA-seq
    datasets from widely used public resources, including GEO <https://www.ncbi.nlm.nih.gov/geo/>, Zenodo <https://zenodo.org/>, 
    CELLxGENE <https://cellxgene.cziscience.com/>, Human Cell Atlas <https://www.humancellatlas.org/>, PanglaoDB <https://panglaodb.se/index.html> 
    and UCSC Cell Browser <https://cells.ucsc.edu/>. And, it can also be used to perform object conversion between SeuratObject <https://satijalab.org/seurat/>, 
    loom <http://loompy.org/>, h5ad <https://scanpy.readthedocs.io/en/stable/>, SingleCellExperiment <https://bioconductor.org/packages/release/bioc/html/scran.html>, 
    CellDataSet <http://cole-trapnell-lab.github.io/monocle-release/> and cell_data_set <https://cole-trapnell-lab.github.io/monocle3/>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
biocViews:
Imports: Biobase, curl, data.table, dplyr, GEOquery, jsonlite,
        magrittr, Matrix, openxlsx, parallel, pbapply, purrr,
        rPanglaoDB, reticulate, Seurat, tibble, tools, utils,
        SingleCellExperiment, SummarizedExperiment, scater,
        LoomExperiment, httr, rlang, tidyr, methods
Suggests: knitr, rmarkdown, scRNAseq, BiocStyle, htmltools, sceasy,
        SeuratDisk, SeuratWrappers, zellkonverter, GEOfastq
VignetteBuilder: knitr
Additional_repositories: https://showteeth.github.io/drat/
URL: https://github.com/showteeth/scfetch
BugReports: https://github.com/showteeth/scfetch/issues
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2023-11-21 09:18:20 UTC; soyabean
Author: Yabing Song [aut, cre]
Repository: CRAN
Date/Publication: 2023-11-21 18:20:05 UTC
Built: R 4.2.3; ; 2024-04-24 03:34:32 UTC; windows
