# Generated by roxygen2: do not edit by hand

S3method(plot,list)
export("setExperimentName<-")
export("setTimePointsAlt<-")
export(ProcessTimes)
export(SpectraInTime)
export(SpectraInTimeComp)
export(baselineCorrect)
export(checkCompatible)
export(checkIdenticalClass)
export(combineSpectralObjects)
export(computeNMFResidu)
export(e)
export(firstSpectrum)
export(getDefaultSumFunc)
export(getDefaultTimeFormat)
export(getDimensionReduction)
export(getElements)
export(getExperimentName)
export(getExtraInfo)
export(getListOfSpectraExample)
export(getNMFInputMatrix)
export(getPathProcessTimesExample)
export(getPreprocessing)
export(getProcessTimesExample)
export(getProcessTimesFrameExample)
export(getRange)
export(getSpectra)
export(getSpectraInTimeCompExample)
export(getSpectraInTimeExample)
export(getSpectralAxis)
export(getStartTime)
export(getTimePoints)
export(getUnits)
export(initializeNMFModel)
export(lastSpectrum)
export(loadAllSPCFiles)
export(localBaselineCorrect)
export(nonNegativePreprocessing)
export(normalize)
export(predictNNLS)
export(preprocess)
export(r)
export(readProcessTimes)
export(readSPC)
export(readSpectra)
export(runNMF)
export(saveSpectra)
export(scaleNMFResult)
export(scatterCorrect)
export(smooth)
export(spectralIntegration)
export(spectralNMF)
export(spectralNMFList)
export(spectralPLSCalibration)
export(spectralPlsPrediction)
export(timeAlign)
export(wavelengthAlign)
exportClasses(ElementsToSelect)
exportClasses(ProcessTimes)
exportClasses(ProcessTimesFrame)
exportClasses(RangeToSubset)
exportClasses(SpectraInTime)
exportClasses(SpectraInTimeComp)
exportMethods("[")
exportMethods("setExperimentName<-")
exportMethods("setTimePointsAlt<-")
exportMethods(as.data.frame)
exportMethods(baselineCorrect)
exportMethods(dim)
exportMethods(firstSpectrum)
exportMethods(getElements)
exportMethods(getExperimentName)
exportMethods(getExtraInfo)
exportMethods(getPreprocessing)
exportMethods(getRange)
exportMethods(getSpectra)
exportMethods(getSpectralAxis)
exportMethods(getStartTime)
exportMethods(getTimePoints)
exportMethods(getUnits)
exportMethods(lastSpectrum)
exportMethods(normalize)
exportMethods(plot)
exportMethods(preprocess)
exportMethods(summary)
exportMethods(timeAlign)
exportMethods(wavelengthAlign)
import(ggplot2)
import(plotly, except = last_plot)
importClassesFrom(NMF,NMF)
importFrom(BiocGenerics,as.data.frame)
importFrom(NMF,basis)
importFrom(NMF,coef)
importFrom(NMF,nmf)
importFrom(NMF,nmfAlgorithm)
importFrom(NMF,nmfModel)
importFrom(NMF,setNMFMethod)
importFrom(RColorBrewer,brewer.pal)
importFrom(baseline,baseline)
importFrom(baseline,getCorrected)
importFrom(data.table,rbindlist)
importFrom(dplyr,.data)
importFrom(dplyr,filter)
importFrom(dplyr,select)
importFrom(grDevices,terrain.colors)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(hNMF,HALSacc)
importFrom(hNMF,PGNMF)
importFrom(hNMF,residualNMF)
importFrom(hNMF,semiNMF)
importFrom(jsonlite,read_json)
importFrom(jsonlite,toJSON)
importFrom(magrittr,"%>%")
importFrom(methods,"slot<-")
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(methods,validObject)
importFrom(nnls,nnls)
importFrom(pls,plsr)
importFrom(plyr,aaply)
importFrom(plyr,alply)
importFrom(plyr,laply)
importFrom(plyr,llply)
importFrom(signal,sgolayfilt)
importFrom(stats,approx)
importFrom(stats,coefficients)
importFrom(stats,dnorm)
importFrom(stats,lm)
importFrom(stats,lowess)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,spline)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,modifyList)
importFrom(utils,read.csv)
importFrom(utils,str)
importFrom(utils,tail)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,viridis_pal)
importFrom(zoo,rollapply)
