calculate_qc_rsd        Calculate QC Statistics and RSD
check_and_sort_columns
                        Check and Sort Columns, Compare Values
check_match             Check Match
combine_logical_tibbles
                        Combine Multiple Logical Tibbles with
                        Intersection or Union
compare_omics_groups    Compare two groups of samples
convert_mrm_data        Convert MRM Data to Wide Format
detect_duplicates       Detect Duplicate MRM Transitions
detect_sample_outliers
                        Detect multivariate sample outliers
export_omics_results    Export a complete workflow result
filter_blank_features   Filter features against blank samples
filter_missing_value    Filter features by missing-value rate
filter_qc_rsd           Filter features by quality-control relative
                        standard deviation
fit_targeted_calibration
                        Fit a targeted-assay calibration model
flag_underexpressed_features
                        Flag Underexpressed Features in Samples Based
                        on Blank Samples
generate_process_report
                        Generate Process Report for Sciex 7500/5500 Raw
                        Data
generate_sample_metadata
                        Generate sample metadata from file or sample
                        names
handle_missing_values   Handle Missing Values in a Tibble
impute_half_min         Impute missing values with half of a feature
                        minimum
internal_standard_normalize
                        Internal Standard Normalize
load_data               Load omics data
load_omics_data         Load an omics dataset
load_parse_sciex_txt    Load and Parse SCIEX OS Exported LC-MRM-MS2
                        Data
ms1_annotation          Annotate MS1 mass-to-charge values
omics_example_file      Locate a bundled plot example
omics_gui_capabilities
                        Available omicsTools workflows
plot_lcms_features      Plot detected LC-MS features by retention time
                        and m/z
plot_lipid_data_summary
                        Plot and Analyze Lipid Class Data
plot_met_data_summary   Plot and Analyze Metabolomics Data Summary
plot_omics_heatmap      Plot a feature intensity heatmap
plot_omics_pca          Compute and plot principal components for omics
                        data
plot_peak_list          Plot a tandem mass spectrum
plot_targeted_calibration
                        Plot a targeted calibration curve
pqn_normalize           Perform Probabilistic Quotient Normalization
                        for intensities
predict_targeted_calibration
                        Predict concentrations with a targeted
                        calibration model
process_mrm_duplicates
                        Process All MRM Transitions for Duplicates
process_omics_data      Process an omics feature table
qc_normalize            QC-RLSC Normalize function
run_app                 Run the omicsTools application
save_msp                Write a spectrum in MSP format
transpose_df            Transpose a feature table using its first
                        column as identifiers
validate_omics_data     Validate and align omics tables
write_omics_report      Write a self-contained workflow QC report
