| .addTextToPoints | Add text to points on plot | 
| .bestLegendLoc | Search best corner of plot for placing for legend This function aims to find best corner for plotting a legend. | 
| .colorByPvalue | Colors based on p-Values | 
| .determFigMargPix | Estimate size/distance of margin to edge of image (png) in pixels | 
| .levIndex | Transform levels into index | 
| .predPointsPix | Predict and return pixel location of points of current plot | 
| .sampNoDeMArrayLM | Locate sample index from index or name of pair-wise comparisons | 
| .serachColName | Search Column Name This function provides help when seraching column names | 
| addBagPlot | Add bagplot to existing plot | 
| checkForLegLoc | Find best place on plot for placing legend | 
| convertPlotCoordPix | Convert points of plot to coordinates in pixels | 
| cumFrqPlot | Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series) | 
| foldChangeArrow | Add arrow for expected Fold-Change to VolcanoPlot or MA-plot | 
| histW | Histogram (version by WR) | 
| imageW | Display Numeric Content Of Matrix As Image | 
| legendHist | Add histogram to existing plot | 
| MAplotW | MA-plot (differential intensity versus average intensity) | 
| mouseOverHtmlFile | Create mouse-over interactive html-pages (with links) | 
| partitionPlot | Make matrix for layout to partition plotting area | 
| plotBy2Groups | Separate and plot data by 2 groups | 
| plotLinReg | Plot linear regression and confidence interval of regression | 
| plotPCAw | PCA plot with bag-plot to highlight groups | 
| plotW2Leg | x-y plot with 2 legends | 
| profileAsClu | Plot profiles according to CLustering | 
| staggerdCountsPlot | Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used | 
| vioplotW | Violin-Plots Version W | 
| VolcanoPlotW | Volcano-Plot (Statistical Test Outcome versus Relative Change) |