* using log directory 'd:/Rcompile/CRANpkg/local/4.7/repo.data.Rcheck'
* using R Under development (unstable) (2026-07-26 r90304 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-07-27 13:54:00 UTC
* checking for file 'repo.data/DESCRIPTION' ... OK
* this is package 'repo.data' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'repo.data' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking whether startup messages can be suppressed ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [33s] ERROR
Running examples in 'repo.data-Ex.R' failed
The error most likely occurred in:

> ### Name: bioc_cran_archived
> ### Title: Bioconductor packages using CRAN archived packages
> ### Aliases: bioc_cran_archived
> 
> ### ** Examples
> 
> bca <- bioc_cran_archived()
Downloading and caching packages available on Bioconductor for this session.
Downloading and caching CRAN's packages database for this session.
Error in bioc[, columns] : incorrect number of dimensions
Calls: bioc_cran_archived -> rbind -> rbind
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [312s] ERROR
  Running 'spelling.R' [0s]
  Running 'test-actions.R' [0s]
  Running 'test-alias.R' [35s]
  Running 'test-bioconductor.R' [30s]
  Running 'test-cran_actions.R' [0s]
  Running 'test-cran_archive.R' [57s]
  Running 'test-cran_doom.R' [36s]
  Running 'test-cran_history.R' [0s]
  Running 'test-cran_issues.R' [0s]
  Running 'test-cran_targets_links.R' [0s]
  Running 'test-cran_version.R' [5s]
  Running 'test-dates.R' [3s]
  Running 'test-help.R' [0s]
  Running 'test-links.R' [55s]
  Running 'test-maintainers.R' [3s]
  Running 'test-package_date.R' [5s]
  Running 'test-package_repos.R' [46s]
  Running 'test-update_dependencies.R' [34s]
Running the tests in 'tests/test-bioconductor.R' failed.
Complete output:
  > library("repo.data")
  
  Attaching package: 'repo.data'
  
  The following object is masked from 'package:stats':
  
      alias
  
  > 
  > bca <- bioc_cran_archived()
  Downloading and caching packages available on Bioconductor for this session.
  Downloading and caching CRAN's packages database for this session.
  Error in bioc[, columns] : incorrect number of dimensions
  Calls: bioc_cran_archived -> rbind -> rbind
  Execution halted
Running the tests in 'tests/test-cran_doom.R' failed.
Complete output:
  > library("repo.data")
  
  Attaching package: 'repo.data'
  
  The following object is masked from 'package:stats':
  
      alias
  
  > cd <- cran_doom()
  Downloading and caching CRAN's packages database for this session.
  > repo.data:::no_internet(cd)
  > stopifnot(is.list(cd))
  > stopifnot(names(cd) == c("time_till_last", "last_archived", "npackages", "details"))
  > stopifnot(is.data.frame(cd$details))
  > stopifnot(names(cd$details) == c("Package", "Deadline", "type", "repo", "n_affected"))
  > wo_bioc <- nrow(cd$details)
  > stopifnot(as.logical(wo_bioc))
  > cd <- cran_doom(bioc = TRUE)
  Downloading and caching packages available on Bioconductor for this session.
  Error in bioc[, columns] : incorrect number of dimensions
  Calls: cran_doom -> rbind -> rbind
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [224s] ERROR
Error(s) in re-building vignettes:
--- re-building 'repo.data.Rmd' using knitr
Downloading and caching CRAN aliases for this session.

Quitting from repo.data.Rmd:162-168 [doom]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `bioc[, columns]`:
! incorrect number of dimensions
---
Backtrace:
    ▆
 1. └─repo.data::cran_doom(bioc = TRUE)
 2.   └─base::rbind(db[, columns], bioc[, columns])
 3.     └─base::rbind(deparse.level, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'repo.data.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building 'repo.data.Rmd'

SUMMARY: processing the following file failed:
  'repo.data.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 3 ERRORs