Package: polymapR
Type: Package
Title: Linkage Analysis in Outcrossing Polyploids
Version: 1.1.7
Date: 2025-10-17
Authors@R: c(person("Peter","Bourke", email = "pbourkey@gmail.com", role = c("aut","cre")),
             person("Geert","van Geest", role = "aut"),
             person("Roeland","Voorrips", role = "ctb"),
             person("Yanlin","Liao", role = "ctb"))
Description: Creation of linkage maps in polyploid species from marker dosage
    scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, 
    as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0,
    both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.
Depends: R (>= 3.5.0)
License: GPL
Imports: doParallel, foreach, graphics, grDevices, igraph, knitr,
        MDSMap, stats, utils
RoxygenNote: 7.3.1
Suggests: ggplot2, Hmisc, RColorBrewer, reshape2, rmarkdown, polyRAD,
        updog, mappoly
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: TRUE
NeedsCompilation: no
Packaged: 2025-10-17 10:56:48 UTC; bourk001
Author: Peter Bourke [aut, cre],
  Geert van Geest [aut],
  Roeland Voorrips [ctb],
  Yanlin Liao [ctb]
Maintainer: Peter Bourke <pbourkey@gmail.com>
Repository: CRAN
Date/Publication: 2025-10-17 16:40:02 UTC
Built: R 4.5.3; ; 2026-07-27 07:16:33 UTC; windows
