783535661736caed39ddd6eca9d20a93 *DESCRIPTION
b65055acfa87ecb7d1225bf46ab103aa *NAMESPACE
e7bc8a4935ef32d6d7843c6514b8b131 *NEWS.md
a8b57ae9091e0c474c771d9a1e06a64d *R/CheckDiemFormat.r
c58333c432b8a1b65d5096d0865426db *R/ModelOfDiagnostic.r
b7fa028a35f82becc41a001b4bfa8468 *R/diem.r
25b45ebef278b1512cf58b010d5f7331 *R/emPolarise.r
cf8816067567ea450a0930accab43630 *R/extdata.r
39b99e68a124f44a0ea03726d6da4f2f *R/hybridIndex.r
6ffe9ead8d5fc9f4eb4d0f1349d07675 *R/importPolarized.r
579331f239090c80e762cc4f9a8fb382 *R/internal.r
1c0f2efef90021beaa40ed7fe974527e *R/pHetErrOnStateCount.r
971544c388565ef1b286d61d88bae6ce *R/plotDeFinetti.r
28063837fa698a86bbca9cca8d73ec11 *R/plotMarkerAxis.r
265c54056e4e575352357c7baeeeb940 *R/plotPolarized.r
a635e9efbf674f56bda9b83ebdb53191 *R/rank2map.r
481a4e095e3ddd2e0b289cccf33b91b3 *R/readIncludedSites.r
3be3331573f5a9954478e198bb5674bc *R/sStateCount.r
d6822e29546910dc658c10dc4f8434a8 *R/smoothPolarizedGenotypes.r
ad6b166d43e18289c6e410d91e90815f *R/variantSites.r
8dfb5b6fa0d1bbc9b07c0faf61c851d9 *R/vcf2diem.r
06b96053bdfced2ec15e3137010a1c71 *README.md
e333fabec995f5c4fb95aa885b048748 *build/vignette.rds
62f40a252d9907d9557947ec13f7a006 *inst/CITATION
bf5ed8d0211e30a3e18c08ffbb2c1246 *inst/doc/Importing-data-for-genome-polarisation.R
1d086ab37f064460fe61560b6a81cfe2 *inst/doc/Importing-data-for-genome-polarisation.Rmd
c571256b56bca7a0d7c93ca9ab0a8979 *inst/doc/Importing-data-for-genome-polarisation.html
03ed78ba30051f289a928aa8ba47def0 *inst/doc/Understanding-genome-polarisation-output-files.R
97313c5eb9d612104957e6dad2361192 *inst/doc/Understanding-genome-polarisation-output-files.Rmd
2a2e0a2ee8eb66a268634208e5f11dc7 *inst/doc/Understanding-genome-polarisation-output-files.html
52eba2c19f663111410c3f337e5aebd0 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.R
c43ee82deec4f0638b017f2c1f7f5095 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
1153ba9d6553d5a0f7271388f8a1f909 *inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html
67e554b1c00509ebeb65d8447c6d4d87 *inst/extdata/brenthis.vcf
06575e9e6a223a800c78ade995220bc8 *inst/extdata/data7x10.txt
b8f49ea8d12ffb825b82e4f25619553a *inst/extdata/data7x3.txt
61ebae03433e1eab7db896a8ef0bdeb4 *inst/extdata/myotis.vcf
8f0396b8c6b2b0283b43e446e73ac080 *inst/extdata/testBarrier.txt
81d1eab7e755a0d0c7449586ffacba43 *inst/extdata/testBarrier2.txt
59d690166d08a2ccd4bb5910ecbebcea *inst/extdata/testdata.vcf
619ebb0e5104db24b2fb641f6f1f9828 *man/CheckDiemFormat.Rd
2dc7d34729ec3cd227f15f49a0c1c2e7 *man/ModelOfDiagnostic.Rd
c5302a20650013ab385cf3a43c919401 *man/brenthis.Rd
7fe9515daf448a0dc4d94f446eb24684 *man/diem.Rd
1500d8b91eab46424c18c919789dbac5 *man/emPolarise.Rd
c72a524ca95a6d6fdeb4ab53674d23d5 *man/hybridIndex.Rd
6cb4f7e67f3a503e23600a4decfa61ee *man/importPolarized.Rd
b8edf4a1cc80a48ce429292860cfdc19 *man/markerAxis.Rd
a827f6e87a5f8cdb8124920992bd2436 *man/myotis.Rd
d658b0e5c00768c6768706d0fd941f4e *man/pHetErrOnStateCount.Rd
558a10671c5aabe39c37d331eec02d50 *man/plotDeFinetti.Rd
960163df07c42817511fcf7f070c08f5 *man/plotMarkerAxis.Rd
869103ec255c78504a33928b57b2b394 *man/plotPolarized.Rd
9ff759c4b770fffe1dbf17df9ecca1f8 *man/rank2map.Rd
c870f384c209eb4db781696e5fd2be88 *man/rank2mapChr.Rd
9699ea8c14382b9aa1396ad2966e8099 *man/readIncludedSites.Rd
59ef8ee3751c636692e2c7c306ce2e08 *man/resolveChosenInds.Rd
3cb0e52ae5eaaeca3aeeb537672ea523 *man/resolveCompartments.Rd
10cf23da1850c60706583ac85e680f10 *man/sImport.Rd
60d28fbd537c27e23b27c1900675ddf7 *man/sStateCount.Rd
9facfc75d306b1623c0e3531264fc585 *man/smoothPolarizedGenotypes.Rd
2e7317858013a54e72c8f72e32a1982e *man/testdata.Rd
993e96615ae068317488e6e017c7cd68 *man/truncatedLaplace.Rd
277e114f216638b23785b6086260b133 *man/unbiasedWeightedStateChoice.Rd
1899cd87de48afa790e60a810a2021a4 *man/variantSites.Rd
9d8304569059fa7c7e5e8c88d3b3da0e *man/vcf2diem.Rd
dc2dfdb6f5e44147dfd11b24055b3bbd *tests/testthat.R
7332d4caa92a36bb0b8aefddc828218e *tests/testthat/_snaps/vcf2diem.md
3c665600bee8ab222360b9401afa6be7 *tests/testthat/test_CheckDiemFormat.r
026c64429a868ecee9c0549045afdec4 *tests/testthat/test_ModelOfDiagnostics.r
45ef407f4b56690bb34fe7a0e75cc760 *tests/testthat/test_emPolarise.r
c987f5be5b77b0fd7a3d0032bb0ced14 *tests/testthat/test_hybridIndex.r
de9bdebd37f4e64ef3ce61d09bae8f49 *tests/testthat/test_importPolarized.r
93b9c2517d19fbd1273771de72f9e8fb *tests/testthat/test_internal.r
39fe6a0d10304161b48818c79b00cb3d *tests/testthat/test_pHetErrOnStateCounts.r
1990429e7f01fc3d5ceaf5df8b31b05f *tests/testthat/test_plotPolarized.r
36af00b1ba42764fead29fc5405d6f9c *tests/testthat/test_vcf2diem.r
1d086ab37f064460fe61560b6a81cfe2 *vignettes/Importing-data-for-genome-polarisation.Rmd
97313c5eb9d612104957e6dad2361192 *vignettes/Understanding-genome-polarisation-output-files.Rmd
342ac9c0978ec5b576eaa114bd2d03b9 *vignettes/diemOutput.png
c43ee82deec4f0638b017f2c1f7f5095 *vignettes/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd
ada6c5be0db8ab45f3d09cba52421af2 *vignettes/refs.bib
