718dc43ead2128efb774457a2f8bb0ec *DESCRIPTION
78b3feab6a0d75fcb67d5845f6f3394b *NAMESPACE
dfe9e89787d337c39482fa7c2f0985f3 *NEWS.md
374eb7ac7d21aeba5bd57b46642f7bf7 *R/Ancillary_Indicators.R
af73c69f697fd4c0854ebfe1f436cf03 *R/HCRs.R
b51f0265d484b8e13479e16e369e9494 *R/Misc_fun.R
23d08e8e881930147b9dff9c11393def *R/RCM2.R
73e583e48033b75e6121fb700f153056 *R/RCM2MOM.R
ef7932e2c9c38aec425db9914d74fc2f *R/RCM_assess.R
18b5db7c89a0f6f48906b10bd14f3072 *R/RCM_data.R
34b1e5582a92cac796043694c394a355 *R/RCM_est.R
c62e43a8c998c138ad7ff8d2fefd7a2c *R/RCM_int.R
91e7ff72162698bb0a215c54a68576a7 *R/RCM_rmd.R
dcbad76bee6c30a87d59c2dff64dccd3 *R/SAMtool-package.R
326830e232dc4e3061e4e8efa97b3e4b *R/assess_DD.R
ea4f017f5783c27cee06f52fa6516e52 *R/assess_SCA.R
d52ea2845c3da784d4139d558db519c5 *R/assess_SCA_ext.R
1856526b0daba645a0dbe4b38d2bcd43 *R/assess_SP.R
0eaf6ddb47194ef2da1047d6b1cdd20c *R/assess_SSS.R
313b44e6bb4751941c1d3f31dcc98c75 *R/assess_VPA.R
fa5abae0125a5b9c7e4cf9da96f46d5f *R/assess_cDD.R
8bec21671c5a0cf621030eedb3a36f30 *R/assess_shortcut.R
601a64a68c8696ab866261922cee5c38 *R/define_S4_class_RCModel.R
030166dd2d34291664b946a778137a8d *R/define_S4_class_assess_RCMdata.R
f0119e9c14b9498fe7623458e05730e0 *R/define_S4_class_profile.R
99d11e0921c24a5a7eee0ae7e5abe231 *R/define_S4_class_project.R
1ed91897d858106e144faf8654f39ac5 *R/define_S4_class_retro.R
2e705d8cacde86215f15df2912411629 *R/define_S4_generic_RCM.R
cf9a069313057930478333e365a89b66 *R/define_S4_generic_posterior.R
98ae058d4a052a7ab540ccf4e457d16f *R/define_S4_generic_simulate.R
21c3f0acdb7fbf64bbdb8fbfc251f7be *R/diagnostic.R
b5a8d3144657bb7815ddf2ec45741cb9 *R/document_data.R
40453d66e80cdef4b7f89cb1c11ae74d *R/interim_MP.R
a8f5c3f4a23508a3bb95c1ceeed09e8e *R/report_DD_TMB.R
c912c6b18cb9d622d80125645d61206b *R/report_SCA.R
8f550c5513a0de6b59d8ddd812bbba7d *R/report_SP.R
30b0141105f3a9dd94df578947c9c798 *R/report_SSS.R
bf6c50e10fc94c5b8671d47d9759cdb4 *R/report_VPA.R
7bc6ce7db8531f50015446f7a72a42f3 *R/report_auxiliary.R
10aa9d08c5efc0372cd9c0b4c37c5f96 *R/report_cDD.R
68e2c2d4b7a9bfaf6fb759fe8a111cad *R/report_spict.R
561553d4a014d3788d7dd35f279b5e64 *R/retrospective_AM.R
6fc2d371e06f98f9f6ddf23f656dc04a *R/rmd_report.R
b53f71121a73f3d3b68a64b47e326c89 *R/z_MPs.R
6e4df15936c2847d502945fb67feca94 *R/zzz.R
9125ef0d85d3036dbaed8f5e51c56d2c *README.md
9d40159f50a5fc9949cbfe95a2884126 *build/partial.rdb
b2c5a7392aa10d7f72ccea10f4a893e6 *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
c81845d9cb1876d9d6db93e57ea9dccb *inst/include/DD.hpp
79e8c215b68e339a2a82bb4a84e93b24 *inst/include/RCM.hpp
ead12b5dec8076564c00928d42706d60 *inst/include/SCA.hpp
452411ae19cb0860fc65323911cab62d *inst/include/SP.hpp
56063b35de5ef99acd07164144fd990d *inst/include/VPA.hpp
21053e2a75827ad5cc7149d810ef46ce *inst/include/cDD.hpp
ca9c60927a9b433c5f1a76f3a2c5b4b1 *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
3c3faf759d8cc39bafd89691ec159c91 *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
bb00d8a02021703036d6c0103e7980da *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
6be09ad42737570050a931ea4270bb2a *man/Assessment-class.Rd
0c9d03a7c61f63dce3ca166033103e2f *man/DD_TMB.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
a5c050f0b793c377d9968439dc85c100 *man/HCR_MSY.Rd
838ceb948a2e4c699e4fdac7f4e4b200 *man/HCR_escapement.Rd
325bf1d66a8a6fbfca43043fbc0da0d2 *man/HCR_fixedF.Rd
08088b67bad63d7e9a284c87dee3ebe5 *man/HCR_ramp.Rd
e9aa3772bde05c975073ef4ec3752f89 *man/HCR_segment.Rd
bb24c66320f00d56e592012a3dfbf745 *man/HCRlin.Rd
9b4c8a57ff58717f1d74f091dc6b0d39 *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
c9862f4dc21695b9321126b94edc78aa *man/Probs.Rd
d215ac291d8299f99b29bdf6770047f1 *man/RCM.Rd
1e5ef52fa50534d359e1971e69610821 *man/RCM2MOM.Rd
a3547ecc32e62a226b30a3e9a727fd0a *man/RCM_assess.Rd
e55dbb8f9813c5035f03d894b6230c47 *man/RCMdata-class.Rd
8e6069cd7231dbaaab7a5d493ce18a6e *man/RCModel-class.Rd
87f9f650a0dbc2f38698e32cbe5bb40f *man/SAMtool-package.Rd
78d939763aed0930655f0e323d782080 *man/SCA.Rd
f6aeeffdb1806a1d9baeb1b6dfd8c1ff *man/SCA_CAL.Rd
ac686a7a32b8360720c03eb9cd808f31 *man/SCA_DDM.Rd
da20e0d983f34efd707b5978b691a655 *man/SCA_RWM.Rd
647009f3decf38d6e56a829877242a52 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
c45de22d590d72f8a3e65d34450fa958 *man/SSS.Rd
a103a2805e0941bb0d27fa6f2818e6d6 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
72fc610fd6e59efdffa0d7905b264399 *man/VPA.Rd
00fd67bfd4381cad3c159e88d27e05e8 *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
e9ba8c09bf1ed9654b27f6edfb4892cb *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
bf2046a5b0cf55e19f7b6ac69b0a8232 *man/make_MP.Rd
d4d7dd83a351daa04ac950977cfe8fe7 *man/pcod.Rd
eb9282cc8020b1e4735dc8af450cce68 *man/plot.Assessment.Rd
cf02f2339ed192dc32dae93d1d86ca64 *man/plot.RCModel.Rd
2f5e9442dabc1cdce0da73f3cb0d51d2 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
50d034fc948f7c63354a27eed7c42541 *man/plot_betavar.Rd
11384707a97e3b068c9bb3b06a45792a *man/plot_composition.Rd
ca3ac5a54bd97ba6071c10b022224d96 *man/plot_crosscorr.Rd
b54092decd1ecc77fe6cd111d29d66a4 *man/plot_lognormalvar.Rd
594582a745ed519dea9fa1fa2e825fc3 *man/plot_residuals.Rd
0b97ddfca48dce53a009c5a2a57e6e49 *man/plot_steepness.Rd
fdb3eca4543f866f3b415589334e4f59 *man/plot_timeseries.Rd
bc3f9a869c6da38591b4624d78c4c2f0 *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
9b9e6b388ad61199bd4b3e5fda57965a *man/prof-class.Rd
0e691ae573bf0cb7426e84eb1efe1461 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
caf6be38ddaef7f3de8eb61ab3e71439 *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
d02f2fe992c4ff0453d6d76ffde2fa2c *man/retrospective.Rd
49fd686f857d1a4f0a7ed0e1555426ba *man/retrospective_AM.Rd
cca573d623023e6fc59dc63be14b5f1b *man/sim-class.Rd
ce6b53a8c5d86451e0fd16f1b812a230 *man/simulate.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
cc913602124a63c0ad9738087847da39 *man/swordfish.Rd
5e2f2a37373cedc75d0d73c995fc484f *man/userguide.Rd
3bd19fd512573b60c136f1e0b49bfd28 *src/SAMtool.cpp
