c70411d6a1763846cf7f5869e9c67d9e *DESCRIPTION
a720b211561568f8e86378381b46dff3 *NAMESPACE
93ee84f6b996087c53a457a5131cc692 *NEWS.md
6aaff3e1aa7b9d9ff08cfb17847cc2e5 *R/boin12_logic.R
f2bad010db0fb70bb0d619dc321ed366 *R/boin12_selector.R
83733b80b34b8956aa3730677e96ff65 *R/boin_selector.R
7071efdb5e5c23a9702f851b71bf589b *R/calculate_probabilities.R
acc6f106b92794ca773250c366e7d40c *R/check_dose_selector_consistency.R
2f379a24c37ade8df354896b4999d98f *R/convergence_plot.R
1b70a9c435777045fc15e60729cdf7a8 *R/correlated_patient_sample.R
c520bcf7921719fb8f802a110b2a6458 *R/crystallised_dose_paths.R
f2c0bef888cc3ecb571e89eb1cafa25e *R/demand_n_at_dose.R
8fc3b855188fb1c75419ab9077a50087 *R/derived_dose_selector.R
4ff7301946bd921a86172deed252aaff *R/derived_dose_selector_factory.R
b1037c8bcea8c1da82e256639f31818a *R/dfcrm_selector.R
dcd60bdc656f92c3787f432dd2c23488 *R/dont_skip_doses.R
4f37b10e73eebbbd8de1bd7a3f3c27e1 *R/dose_finding_path_node.R
b2d69195f28e111fa3a22f4d30382023 *R/dose_paths.R
03ae91cf5912c3de959d9afedc27676a *R/dose_selector_summary_methods.R
61894b503bd68928a70e875f4bf4ab60 *R/eff_tox_selector.R
26c40448a10323a0d76a2d55a2ee8c97 *R/eff_tox_selector_factory.R
713f3fbadbfd2b33cab1a9cc7b3c7c26 *R/enforce_three_plus_three.R
473e3d1cba96d76104908709ac1bb0dd *R/escalation-package.R
0327125a3957d7b93aea12a65a1a864c *R/expit.R
d7e0f145de55fb4ae8c0ec490d661180 *R/follow_path.R
80eb307cff2980bbb00e6d7f2f879e24 *R/get_dose_paths.R
f973f71b92b3babaf78f8fd590945a91 *R/get_empiric_crm_skeleton_weights.R
487aa98b87bc24ff2c559aff6017b777 *R/get_potential_outcomes.R
400623c25d3ca5ad4cd826d923ff08fe *R/graph_paths.R
02417a36e02ee1b60ded80bee9d61d62 *R/helpers.R
b452538bca44b770d01891ee336d0165 *R/interface.R
339b27521124f1c97ebe61c91243ebce *R/linear_tolerance_weight.R
a4bd2ecf76c94949f75511c2b58939b6 *R/mtpi2_selector.R
f79af0ed31096b9efd2c4d48b83c900f *R/mtpi_selector.R
0ba1ca399c5f72d3d167288bf8cc0c7c *R/num_cohort_outcomes.R
49b6cd4fc2bd40f55b7bfe657c08d21a *R/num_dose_path_nodes.R
ae9a04186a5bc5adc0c850849804ddb2 *R/parse_phase1_2_outcomes.R
41b8f95044f166bfb68242500cd55a95 *R/parse_phase1_outcomes.R
ae5ef2dc90947e40ee7d3c6f37a412e3 *R/patient_sample.R
89d4c141860c195cb4c1ce63aa93e2f2 *R/phase1_2_dose_paths.R
1a33abc5cb3fe45f9e2c7be4b07f98e2 *R/phase1_2_outcomes_to_cohorts.R
3be68e4c50fdfe45ab228942e0d5a018 *R/phase1_2_sim.R
dc17034e1caaf3e136c9f3e31b8e51c2 *R/phase1_dose_paths.R
71929d8cdcad030c2b3a5357c2daa639 *R/phase1_outcomes_to_cohorts.R
a536802d41663f3e576368db1a0885af *R/phase1_sim.R
00479261c854cbefb2c66cf2fcbaa6e5 *R/phase1_tite_sim.R
d4d090e902b3f60e7bdd90a7daccb040 *R/random_dose_selector.R
1c3e0a0e61926a10863943504ce8c2f9 *R/select_boin12_obd.R
a73d3b5f693b2d5780ec1db2fabbef4d *R/select_boin_mtd.R
6ceca56a04e481693a8aeb67d63c5a25 *R/select_dose_by_cibp.R
e25d8233e7aa693835c07efba29e0051 *R/select_mtpi2_mtd.R
7c60c33caab34b3d9c2d89ac275526c7 *R/select_mtpi_mtd.R
4d0214f20eb1415b79134b12a859407f *R/select_tpi_mtd.R
5ab009c6cac69eafb8d9336891ef5477 *R/selector.R
0cf99ef67eb7fd4fc79fc4b59cf5c036 *R/selector_factory.R
1218f56f44d0e9ecc648ea7366095f91 *R/simulate_compare.R
0250ab04c9b2920e7783397245e0e2fb *R/simulate_trials.R
26089e0cbf4f96d961fd1f7b6602be50 *R/simulations.R
9b091a47f89f323535ab2af1989ef808 *R/simulations_collection.R
60f2684c9a102c59e8af0be54be2eee8 *R/spread_paths.R
b7bb9fd28b24a4a2ee7c32e97307cbb6 *R/stack_sims_vert.R
3392cb861e8cf02ea9a18de26af2a282 *R/stop_at_n_selector.R
4c862076ce276a7fc3a38b181d6cc5d2 *R/stop_when_n_at_dose_selector.R
24c939974251a6ef4ee8d61617dc10ac *R/stop_when_too_toxic.R
6f1077d2fdde6177c009634ecb1f86a4 *R/stop_when_tox_ci_covered.R
8051fb61004a8f15976b6836b179bdc9 *R/three_plus_three.R
30a0ff9d68b6e604e2b1373634e7b93f *R/three_plus_three_selector.R
3119aa8d28f18398bd2d55d3eb4ed020 *R/tox_selector_factory.R
07a54950391a038d9d9ad505727768ef *R/tpi_selector.R
24824684de971083e5b68b5dc43b8b20 *R/trialr_crm_selector.R
e5711584d072902042e6077ba8c075db *R/trialr_efftox_selector.R
bced86c147a3f7e589d42fcbd6732f87 *R/trialr_nbg_selector.R
1cc37a9f1f037afef2ea28c468546a42 *R/try_rescue_dose.R
f37ad6fb8db84a7bc6ac17b47763edea *R/wages_tait_selector.R
4749394b836fffd802e599fe6306b58f *README.md
bdf30fba416672ffd788dc5f2e0a6f92 *build/vignette.rds
f0dae30c9ce431a7f184adb201c3f2e0 *inst/doc/A100-DoseSelectors.R
abbfec24d5aff7efa6c64bf1a9998ed3 *inst/doc/A100-DoseSelectors.Rmd
9ea0d2c2c201a2688b97db26da78ae96 *inst/doc/A100-DoseSelectors.html
b341b89944201b47956b328959bce067 *inst/doc/A205-CRM.R
e2e0e15d7bbdb49abcd5b9e7e2220dd1 *inst/doc/A205-CRM.Rmd
d36d1de037e543efbc0b0b77dcfcf470 *inst/doc/A205-CRM.html
61433b1b3a7e95133c83f4ed2719339c *inst/doc/A207-NBG.R
7351708097cf8ecabd708fefd3255759 *inst/doc/A207-NBG.Rmd
3a10a361f482a16eaafdf56f6c30adec *inst/doc/A207-NBG.html
f457f17a98ce2ec2e2e2ab3e57e0b9fd *inst/doc/A210-TPI.R
2e455c608be31f625574a2cb1f174a3b *inst/doc/A210-TPI.Rmd
74347c47cf188a839f36c0068bfc3001 *inst/doc/A210-TPI.html
1915b07b53b33913005904e939bd8bf4 *inst/doc/A220-mTPI.R
98fbc28b460a7e39cbe27942606ad6e4 *inst/doc/A220-mTPI.Rmd
4013c8224e72dc1aa9fc90654af7c78d *inst/doc/A220-mTPI.html
f4f050545026126d2562f8e4566ed3f2 *inst/doc/A230-BOIN.R
ad49666054d33a768e021706afacd2df *inst/doc/A230-BOIN.Rmd
38ef0bff6f6e511b249c49530825f6f4 *inst/doc/A230-BOIN.html
efc403d9a56c46f11ed9f4c86d8888de *inst/doc/A600-DosePaths.R
9f3d511f1707f871dcf76ea2d022b4b5 *inst/doc/A600-DosePaths.Rmd
2eecce781c117dacfe34ea62b77aa957 *inst/doc/A600-DosePaths.html
dac393eee977e1eafa9525268194cf68 *inst/doc/A700-Simulation.R
b9828c1ac80d1a355f11f53ce311885d *inst/doc/A700-Simulation.Rmd
c84500f915fb5bf919bcdaac60790232 *inst/doc/A700-Simulation.html
cda95a7f43d373642727a73198a1b690 *inst/doc/A710-SimulationComparison.R
e9b29d014b12f50081844650421fd49c *inst/doc/A710-SimulationComparison.Rmd
01738462273cfa6181c119c31e97fff0 *inst/doc/A710-SimulationComparison.html
df72ef42669f09184d6471ec6d43f1fe *man/CorrelatedPatientSample.Rd
5aca22672bcff99ae8f92173f839aa57 *man/PatientSample.Rd
119ad8568ac17a8ab9dcdf1f63729ee1 *man/as_tibble.dose_paths.Rd
649ea644426c2c021473375942efce10 *man/as_tibble.selector.Rd
f98202b8e4aaf057cc6cd3e3f16881ab *man/as_tibble.simulations_collection.Rd
0eb79013a50ade6424582d887fa7e485 *man/calculate_probabilities.Rd
2b420e8d903abbe72fdd6e6ca6d14ba9 *man/check_dose_selector_consistency.Rd
d62f7c2539b3e8674761e1dfc7addaab *man/cohort.Rd
eebb0a0f7a4283ae888ac369ed38928b *man/cohorts_of_n.Rd
da90677b0ce62b98457d4bacba87f94b *man/continue.Rd
82e3c7aa3a617c1ef9cacb58bf26a575 *man/convergence_plot.Rd
3b26b63042e59e258dc0092d5c322fe3 *man/crystallised_dose_paths.Rd
1a2bfb0e1e4e4cc198cce8fd684c7708 *man/demand_n_at_dose.Rd
a7e639245a56336608856321940ff71f *man/dont_skip_doses.Rd
6dc64ed7776b1735af16e820d5ad5758 *man/dose_admissible.Rd
b25d3c8d4e5acfed5532326dc49523f1 *man/dose_indices.Rd
3a08f843b93e582dc7595cd5365df381 *man/dose_paths.Rd
5e1e772f74644743e2195ec5e0db1cd7 *man/dose_paths_function.Rd
9959ea85b342b0428c74a44c09ec52c7 *man/doses_given.Rd
99cad77a762510ba91bff73750d1515e *man/eff.Rd
28b77b18f3dde61515923e236e786d6f *man/eff_at_dose.Rd
581dbc28bddd0d5bb8209e0a8831ac11 *man/eff_limit.Rd
55a4bd24f297b24776dbeb06cd099a59 *man/empiric_eff_rate.Rd
8a550499121e28869d48a8f9ee04795c *man/empiric_tox_rate.Rd
4e4d2b14de7ed2a98245e614c558ac06 *man/enforce_three_plus_three.Rd
c012f157eb71abfc95ce875f11c633e6 *man/escalation-package.Rd
6bb291cb6ca7e5ef20d222ae56160233 *man/figures/logo.png
b68c65c11817afe481a613124511cabc *man/fit.Rd
f23d31fca49b7a4e47b3041c1638f793 *man/follow_path.Rd
79bcee7dffbbc5e7a345a543f8de2756 *man/get_boin.Rd
23b79ed985a4e3d5986c35559ec15467 *man/get_boin12.Rd
4e695e83ab4250a0b7d279257fdd869a *man/get_dfcrm.Rd
8ab423554da7d5d62fc440676c21e66f *man/get_dfcrm_tite.Rd
150292aecade117b481bd4ad0e3ee925 *man/get_dose_paths.Rd
8b23bcb51b0845a2d7952340fdae72b6 *man/get_empiric_crm_skeleton_weights.Rd
323525e52a1e8cda4a82cf26077db320 *man/get_mtpi.Rd
310cf5f3b2f2bd8cb64a6932ddc75b5c *man/get_mtpi2.Rd
ea84f15d653f1cc7a38fa30dc4d232a6 *man/get_potential_outcomes.Rd
b9c50d7e7bbe8419e1b32de52298130e *man/get_random_selector.Rd
a41014e9b5fdb4b5db646c9d82ceb225 *man/get_three_plus_three.Rd
2b00c1a10541c2bf26a462106950e262 *man/get_tpi.Rd
87c59bbb0a35236c9a5bcc4334614c47 *man/get_trialr_crm.Rd
894273e6c0077ab521b96a143a0ad1c8 *man/get_trialr_crm_tite.Rd
ea095960dd1e3de360dc5574cf0a6626 *man/get_trialr_efftox.Rd
62d95016250417d1fa1e5317751a68de *man/get_trialr_nbg.Rd
067c3a44b34f8077d87adc64b6b3dbab *man/get_trialr_nbg_tite.Rd
aa56c9746164c6b0eba9b0099316f09b *man/get_wages_and_tait.Rd
0182675362776257d4c3dcf7d4073e60 *man/graph_paths.Rd
6b1579c7e7b930a55652f91b8c08635b *man/is_randomising.Rd
7c604a528ad5b1ee1514bc82db9ba1ae *man/linear_follow_up_weight.Rd
17842439e366becc4ad7b99e8e7144bb *man/mean_prob_eff.Rd
fdb4015c604e7a3646cb3aca8382b472 *man/mean_prob_tox.Rd
953741fab1981391a2ecce0064f84a03 *man/median_prob_eff.Rd
1fff15610aecd42fc460b7b826ca8324 *man/median_prob_tox.Rd
95163c803dd95b2f213be742a4de0c21 *man/model_frame.Rd
adaf06f2264776d02aebd573d0b78670 *man/n_at_dose.Rd
a5d39dec5a070b05a77b0500d61eea55 *man/n_at_recommended_dose.Rd
2de5f8793d2c7096b1e12350278947c4 *man/num_cohort_outcomes.Rd
98d1399c87ab5242b43dd28408e6ed69 *man/num_dose_path_nodes.Rd
b01fddcf5f393e4e7ff593edaf1e4919 *man/num_doses.Rd
85aab26cf6eb386efa1a5da469d733b0 *man/num_eff.Rd
d73725e626a409efcfcde5853d07b68a *man/num_patients.Rd
319ac0bc1c1c00f329c7d7f5006bfdcf *man/num_tox.Rd
f57ceba5db25b996d2d64ee3eaff7930 *man/parse_phase1_2_outcomes.Rd
15d5f49467cd6d68f0b37d71f03381b7 *man/parse_phase1_outcomes.Rd
2a7b5d024248ada1566a2a0ba9928c80 *man/phase1_2_outcomes_to_cohorts.Rd
e06f2a118c06a623eb5fbf680c9e79ef *man/phase1_outcomes_to_cohorts.Rd
3d169947e2df826e041bab11efd41a67 *man/prob_administer.Rd
214e1ebd68c68d9af57f35f93e99c58e *man/prob_eff_quantile.Rd
a27624f6aa5b878d992a381e243045c7 *man/prob_recommend.Rd
8477e1ce835392ea8418cff4263dbd1c *man/prob_tox_exceeds.Rd
2c17957f74cd765b6a676d0d5d35a36f *man/prob_tox_quantile.Rd
7cea1ecff1714403e8a06034c8e64faf *man/prob_tox_samples.Rd
22ff129a0e1966a09333655f2176b45c *man/recommended_dose.Rd
90fc4d1e8e8e3a2ab1aec362336d6a4b *man/select_boin12_obd.Rd
8b6fd125d27b88405a9185bc02bcce27 *man/select_boin_mtd.Rd
511e620bd020316c7eb5a84ed7ec1723 *man/select_dose_by_cibp.Rd
13dc4be341e28a1b120383448d1ee822 *man/select_mtpi2_mtd.Rd
6061974dd6af29eb212e123bf0bc4596 *man/select_mtpi_mtd.Rd
0f37b72adfc4c2e5435bb1e912321c50 *man/select_tpi_mtd.Rd
e2d8eb044c9e7bf3847797c5488ad589 *man/selector.Rd
b0611155436e39f650c5a0095253fff0 *man/selector_factory.Rd
a156930d751462814c0c2d1bc4777819 *man/simulate_compare.Rd
29b7a7a5fcede3ceacadf7949bea7752 *man/simulate_trials.Rd
38da60d7bf924f99ce01bc126c9df9cf *man/simulation_function.Rd
1b7800f349a93eb338477c84414273ba *man/simulations.Rd
393ee912a3cc2977ff99c3592c1c4f14 *man/simulations_collection.Rd
2287f7baa8dc983cbb00880b8de66ad3 *man/spread_paths.Rd
5ec8aa424b4b4b9496f8bd618f8bae5f *man/stack_sims_vert.Rd
62124c95b764e675167fbb9865d21e9f *man/stop_at_n.Rd
0c68dd3d107962639492b2c0c5d158a6 *man/stop_when_n_at_dose.Rd
189ad8cd09a957eec803642bf10f6f60 *man/stop_when_too_toxic.Rd
024cb4c4a4317b33b24b9e40a2bcd40e *man/stop_when_tox_ci_covered.Rd
4eda43e3dff95707589052b0dde7e3ab *man/supports_sampling.Rd
b2d0a595622db143e83331b8a011ae45 *man/three_plus_three.Rd
0c8f156182f7755f370a2ef63cefbdfb *man/tox.Rd
8d5dd4e2aecabf9de1712ed6dd7fca8d *man/tox_at_dose.Rd
734bdd2195a4e396f380b48ed162c043 *man/tox_limit.Rd
d7ff4a8e5d05991a0240d38f5ffb779a *man/tox_target.Rd
db365c567e98db0787235d1b828e916e *man/trial_duration.Rd
0c5f22edca48bff865a81573e4075208 *man/try_rescue_dose.Rd
70d4b00a3b66db8c64600cafa594f8d8 *man/utility.Rd
95713cf78819d2ff2a87820d5a9053bc *man/weight.Rd
0c4386add66fe6c515b08fc0582dc576 *tests/testthat.R
a1f98edde7f20ba7368eab2ceb178b6a *tests/testthat/test_boin.R
245ac1874b04cf3f626f835a54f9b5bf *tests/testthat/test_boin12.R
066554cd1bc772624cd7422bea7e501d *tests/testthat/test_correlated_patient_sample.R
0e1b21bfe04975af2e1eb6bd89283148 *tests/testthat/test_crystallised_dose_paths.R
04e5164d8d9de4bbf739bf1701cd5df5 *tests/testthat/test_demand_n_at_dose.R
c1da7cd26ed829f752b669a3d106c659 *tests/testthat/test_dfcrm.R
25bde81db85d37d5bed3a573e1409c5f *tests/testthat/test_dont_skip_doses.R
970942267c6c2e70994d55b89b20b3d9 *tests/testthat/test_dose_paths.R
91dec5c9e0e2a4347e0f35a75cc1e1f4 *tests/testthat/test_enforce_three_plus_three.R
2eca875b453297383a562ef21d523064 *tests/testthat/test_follow_path.R
373644a5dc4f6a7e4e2816f6fd692a13 *tests/testthat/test_linear_follow_up_weight.R
80d7d43ccc37f461f2fefa30c915f38f *tests/testthat/test_mtpi.R
5012d2bec424712e66b1f53c13f7dcae *tests/testthat/test_mtpi2.R
96bbe44e224b4d0c3d95a5b32e5ad52c *tests/testthat/test_num_cohort_outcomes.R
e8ce5a3f7505c9a93155f2dc4c36b867 *tests/testthat/test_num_dose_path_nodes.R
98d569975cf82833ac96d6f10991d6f7 *tests/testthat/test_parse_phase1_2_outcomes.R
a030ffc7e30d94db9466982250a46a0b *tests/testthat/test_parse_phase1_outcomes.R
a1e12286e6fabb7571bb97eccb008a8e *tests/testthat/test_patient_sample.R
ebfa9684366663681ab97b5fdf32d6e9 *tests/testthat/test_random_selector.R
e4fc40d86c385762b49fddc695c7f138 *tests/testthat/test_select_boin_mtd.R
8e62c04b4441575936d4b28923925f42 *tests/testthat/test_select_dose_by_cibp.R
d00a90586f4cf817891371263b164f36 *tests/testthat/test_select_mtpi2_mtd.R
13ded6726cb0bf63b6171e591aef6feb *tests/testthat/test_select_mtpi_mtd.R
28da5bc194c248ed0bbad4c274b05fd3 *tests/testthat/test_select_tpi_mtd.R
8fea4bbf5b8d2bfba628543279b7918a *tests/testthat/test_simulate_trials.R
18146d8641d39ed3a0caf5f91ca681eb *tests/testthat/test_stop_at_n.R
d58ad863f0b0f987262fb9d04f2a8923 *tests/testthat/test_stop_when_n_at_dose.R
693ad032f18828b50c1b62d9ee305b90 *tests/testthat/test_stop_when_too_toxic.R
2336e6961ff9f69e010bdfa789207995 *tests/testthat/test_stop_when_tox_ci_covered.R
1ac36281cd689ee2aa64962ba0cd956c *tests/testthat/test_three_plus_three.R
98b0957bdc44d616f69028442b3a6af7 *tests/testthat/test_tpi.R
af7ecc7436966a83a315b1edc989df65 *tests/testthat/test_trialr_crm.R
087477d025ab1f94dd18cae1c9f1bfdb *tests/testthat/test_trialr_efftox.R
94e1c8f1600a3927edb8c6bca2ac3d6c *tests/testthat/test_trialr_nbg.R
1ab310ec1fc3aa89db216a767e591423 *tests/testthat/test_try_rescue_dose.R
0c6643883010da8a2e974ab10d3067d1 *tests/testthat/test_wages_tait.R
abbfec24d5aff7efa6c64bf1a9998ed3 *vignettes/A100-DoseSelectors.Rmd
e2e0e15d7bbdb49abcd5b9e7e2220dd1 *vignettes/A205-CRM.Rmd
7351708097cf8ecabd708fefd3255759 *vignettes/A207-NBG.Rmd
2e455c608be31f625574a2cb1f174a3b *vignettes/A210-TPI.Rmd
98fbc28b460a7e39cbe27942606ad6e4 *vignettes/A220-mTPI.Rmd
ad49666054d33a768e021706afacd2df *vignettes/A230-BOIN.Rmd
9f3d511f1707f871dcf76ea2d022b4b5 *vignettes/A600-DosePaths.Rmd
b9828c1ac80d1a355f11f53ce311885d *vignettes/A700-Simulation.Rmd
e9b29d014b12f50081844650421fd49c *vignettes/A710-SimulationComparison.Rmd
73fa20b6bbaf3fbc9cdb1afcfb738693 *vignettes/library.bib
