c12fd6d86a06d130be043a53e998574d *DESCRIPTION
5d82e9946ace180a66d2fe6db26780f1 *LICENSE
0f8a1f018597c7205c749c345948fdea *NAMESPACE
2049ab048fd3b22820b14241024b117e *R/RcppExports.R
13bb7bf0b9f511756ad0d75f731d1437 *R/calculate_gene_rank.R
c6d322165785a8fa5b40ffa0f41b6806 *R/data.R
ac54a8d389f9c8d499a34a5c57d50d59 *R/import.R
16da2d1c57bf20a310ad66f21a7a7f0c *R/inferCSN-package.R
6a426a63ce1e3a024860a4423ce96964 *R/inferCSN.R
459540a87742d6906d9e20d113ca89eb *R/meta_cells.R
74c36d33ade0a9c3e06166005c91f279 *R/network_evaluation.R
d17066be2663b8556547c9500cdb937c *R/network_sift.R
94a0f047c9c140487d397d1b25caa9e8 *R/network_visualization.R
d63dcfcf10dd2b564acddacc53b74caa *R/plotting_functions.R
4855a7bf63f632256b0948b4e6efd12f *R/single_network.R
3d3b7526208c4c216223747973b0c46c *R/sparse_regression_model.R
95e1f310c261fd414a88b0a341d0ce33 *R/subsampling.R
36dea1be766a429ad0f88d5746064623 *R/utils.R
c31ce09121460ef751a8d22a775886f8 *README.md
c865cc831c3370c46b93efe15036051c *data/example_ground_truth.rda
7876ce105fe62fea51999bf207905aab *data/example_matrix.rda
e14e9b714f5e7617ed2c4b727cc48e34 *data/example_meta_data.rda
c6a07e36e26defaa5eccf28f682baef2 *inst/CITATION
e3219d0fc94ba0590b2b0010f822a738 *man/as_matrix.Rd
0638516faed356f1abb80a1fa802a4ef *man/calculate_accuracy.Rd
946d7dac09c00938fb3083234071c117 *man/calculate_auc.Rd
6806399963ae4a5db304801dba708e93 *man/calculate_auprc.Rd
6ae027f5495bcf0a29f97506f7d0569e *man/calculate_auroc.Rd
fd67d3adf24460a146a0f16dd62e2dc9 *man/calculate_f1.Rd
c7abcfceaacb7157e5be47745a845686 *man/calculate_gene_rank.Rd
44c67c34f44f3cbb97d770e10b717d44 *man/calculate_ji.Rd
7349a1b4fd2c6f0be5d34e080003c429 *man/calculate_metrics.Rd
8e9c8e1bcf34d694d8d6deb64f78bfac *man/calculate_precision.Rd
cba4155254836be1bc971549d442ddbc *man/calculate_recall.Rd
8903d723321b9ffa2af551773aa81972 *man/calculate_si.Rd
b761516b7523845b884fba1d9fcac20b *man/check_sparsity.Rd
e856bb7a0999de08ef178be2bb203a7c *man/coef.srm.Rd
bea92ebfc3cc63a4375cd260d58a1e42 *man/example_ground_truth.Rd
369f179d33e62b3546d42b46591e907d *man/example_matrix.Rd
4395d138df2bb37a4603150b74963ca3 *man/example_meta_data.Rd
4cde6e83b2d3b96a27c12cd1ba8e0091 *man/figures/inferCSN.svg
441c706da25cca5e98d42a3065f82254 *man/figures/logo.svg
3a2d4feb201b0f11314cf74ad8858cef *man/filter_sort_matrix.Rd
c855c111e094218880c8c4f43a71acdd *man/fit_srm.Rd
c7111ff8e1534cbeb1ebf1dfbd9e79fe *man/grapes-ss-grapes.Rd
4ae3b6c9559bab218182cae20417290f *man/inferCSN-package.Rd
93dc29f511ac1281f8fc942227fdae4d *man/inferCSN.Rd
ef6b495e30837363c32e6bdacfd82167 *man/log_message.Rd
8e4fdc91c93f95ad1cf68ce6feb44aad *man/matrix_to_table.Rd
8a45269a7b26aeddb27eec78b7dab911 *man/meta_cells.Rd
a9437841dd1e039b0a452bbcdf1070d2 *man/network_format.Rd
145e2a0f6f294985440255caa84773b4 *man/network_sift.Rd
24fbc0064ae25a4e0a686a677d7b7ae0 *man/normalization.Rd
6e84d34d3eb74b800db1de6316b20522 *man/parallelize_fun.Rd
92d1a47a1128308657a7fee9e8a51b25 *man/pearson_correlation.Rd
6abd98e278ef57d5fa1f79da0fd04b93 *man/plot_all_metrics.Rd
c052721e9f26cd1bb4860b51b9bf3029 *man/plot_coefficient.Rd
b8e0dc382da2bc1ba54a56f7ea8e9ef8 *man/plot_coefficients.Rd
c232000512890b4a0d6127a4d9ff8b3a *man/plot_contrast_networks.Rd
4cace9266a9ada89ca7910e2a4dfa8f3 *man/plot_dynamic_networks.Rd
820dddfc0cf1c3b399d6d822e60ab287 *man/plot_edges_comparison.Rd
de7b8d59cbd94ee69120409166829e4a *man/plot_embedding.Rd
406ddc844b1a5b36d416c90912a90940 *man/plot_histogram.Rd
2118572269e10f740242e50062f39557 *man/plot_network_heatmap.Rd
71766b78acbbec12d2f43a7b6dfea5dd *man/plot_scatter.Rd
252a46a24756a7980d143309dc10bb0b *man/plot_static_networks.Rd
169af8d656a67a7bf273f0dafe69fc4a *man/predict.srm.Rd
d5ac88f4b53994fd16f115e99e4e0cc7 *man/prepare_binary_predictions.Rd
8ab38fc662a69f7011a1e37d0fd9174a *man/print.srm.Rd
e097fb0f834bfc70cd722f45cfba9529 *man/r_square.Rd
5c7f89ae1ac4d5c068763a404d266463 *man/simulate_sparse_matrix.Rd
b471700d03e37e45a1728e1d4925408c *man/single_network.Rd
7b38fffcd007a467037daed6e7e773ee *man/sparse_cor.Rd
17f27de164cfe2cb3c9ec73714acce68 *man/sparse_cov_cor.Rd
1d0a18c7466b38927b2e017eb5d4ba2f *man/sparse_regression.Rd
67bc48e7b29bc92aef8768c99c5366be *man/split_indices.Rd
60cb5471d0352a9b18893eaed6f20b9f *man/subsampling.Rd
8dc026163ffb0588e06fa8e51158fdda *man/table_to_matrix.Rd
caa5f4381f5a0057c1342c8961fbffa8 *man/weight_sift.Rd
5cb69c03e60e7fb586a1e86dc9143813 *src/BetaVector.cpp
06ba7ebc00f85103556d4ea1aad966ad *src/CDL012LogisticSwaps.cpp
e02aa1e4a43191756a035305abb60fda *src/CDL012SquaredHingeSwaps.cpp
b5a09bddd72266cdfd07be93429d0335 *src/CDL012Swaps.cpp
12645d3077f2a8d871ac11bf86c93629 *src/Grid.cpp
973a36de2365067b5b5c0533674b4a28 *src/Grid1D.cpp
96db98d372e51b3dbab71e883c750e92 *src/Grid2D.cpp
70b0dafc4795b2c410da387788076ef7 *src/Interface.cpp
5a59c8342f64ee0f58b0b1c1153a2296 *src/Makevars
e3677cd42a05775075dd2249bbe044b6 *src/Makevars.win
5b6b236b9fcf107a7e232fd6ba79e59e *src/Normalize.cpp
232c01f173f8e637dd8b5edd140bd197 *src/RcppExports.cpp
9708933fff3a1b9dc04f7a5c77676fd3 *src/Test_Interface.cpp
21d114bd5c3a9dda6496ab9412c54949 *src/asMatrix.cpp
6922292166664390807484db1a4d4e6b *src/filter_sort_matrix.cpp
c033a9e748471e05aa7d0c6db8a02112 *src/include/BetaVector.h
54f566d2a8248cf64edf78b7be4f916b *src/include/CD.h
7a08babf994026bcdbd11aa3b812e2ad *src/include/CDL0.h
fbdc0eb44fb7e72c56d7fd052fbd82be *src/include/CDL012.h
90fe3b904570cdaa5401f27d6e93a8b6 *src/include/CDL012Logistic.h
e0a011fb2ac0a52fe4a47d806edc1d81 *src/include/CDL012LogisticSwaps.h
180d00ca694c90251b188e6f504bc674 *src/include/CDL012SquaredHinge.h
759c838d8aaebb128f3e68991e9747fb *src/include/CDL012SquaredHingeSwaps.h
b6f39446bcb5b8d30c7ff592a57dfe05 *src/include/CDL012Swaps.h
3c65caa73f70506f9914640898d13c6a *src/include/CDSwaps.h
4697e52978ac34c0fee2e9da15a776ad *src/include/FitResult.h
5a554a2ac4d140b77cd116dfd8711af1 *src/include/Grid.h
f5c085c78607a76cefd8ea0cca276b28 *src/include/Grid1D.h
4ab2f96aed44bd9022066fab7203b21d *src/include/Grid2D.h
bd52b5e74753724e50c8da6e468f991b *src/include/GridParams.h
e0869fa83acbea00b605b7bf81f6a1e1 *src/include/Interface.h
deee7d81e16e0bdb18a173d7e68b1e4d *src/include/MakeCD.h
89ce36fe039c4fd4bffc259ec7d0b663 *src/include/Model.h
747b844b6bcd0fdf62dbb2409ba7ac9b *src/include/Normalize.h
317fd5f523c4cd06306133d223eb9eee *src/include/Params.h
6a4a4368696e4f099155f049fe449a6c *src/include/Test_Interface.h
396526becd1fa68ebef888b991732e92 *src/include/network_format.h
6161fb790b643c8582bf8102261fff35 *src/include/utils.h
92adf18d7f45b84fa413538c9f56a3b3 *src/matrix_to_table.cpp
5386e845ca01638adb96a48dc6425de1 *src/network_evaluation.cpp
f005de8362997b9775fcf42591edea7d *src/network_format.cpp
c8ab3317c092ff27dc96506a858e47c4 *src/split_indices.cpp
c208aef9a23c4d5fe1951a0d39ee6c44 *src/table_to_matrix.cpp
173eb9db03fc11457ba0e1f0ec8e63c6 *src/utils.cpp
360b8ff565efea725a5dac1ff256459c *src/weight_sift.cpp
