f7e486ac54d74ae223270e92cea3f5ed *DESCRIPTION
2d8b1a3e1d272eecd63d9c3845f9d81b *NAMESPACE
970d7a10fec8ce85e697c59a3bf462c7 *R/DDD-package.R
a24aaf668f621bbd70bc4163de5e887e *R/RcppExports.R
55c5f1f58af04f4b87fab76a6cbb5047 *R/bd_ML.R
6bf6a2e87e5bf7b5c2505aff5517ff8a *R/bd_loglik.R
abbd6a6498e1cddff801e5ba469a8786 *R/bd_loglik_choosepar.R
f38425e2f3e6c2099a8cfd4c0967eddc *R/dd_KI_ML.R
6107b80dc55a8f02931ab219e1da89dd *R/dd_KI_loglik.R
ce05b9f95fc79fb53840f06d1b39cb05 *R/dd_KI_loglik_choosepar.R
e315fd401b652553cc2dc1aeea5f326b *R/dd_KI_sim.R
3bdd73315456657f2223019fd56d6ef4 *R/dd_LR.R
ecc1d92f1176217f444407bcd00269d0 *R/dd_ML.R
21b7a68fb0b1ce7042671685496ff09e *R/dd_MS_ML.R
e69de3c22b0c65127e8f0a10653f310c *R/dd_MS_loglik.R
7f0cecde751e25656cffb40bb4b9f727 *R/dd_MS_loglik_choosepar.R
0d27cd14a2f8f3f1f44286326772151e *R/dd_MS_sim.R
0260b22a3a66b3cc9c73020c3f3636b7 *R/dd_SR_ML.R
f52a6c79cc134f92411466b432149768 *R/dd_SR_loglik.R
4cc410da8c37b379e8adec2e750eea1d *R/dd_SR_loglik_choosepar.R
242a275921e78a32eaf07fdb3db32f76 *R/dd_SR_sim.R
e0777d354c0a2b5ad5ede75ce1473359 *R/dd_bootstrap_sim.R
15ec74cec3501c4d9734087a02c70116 *R/dd_loglik.R
7b4e17f84aa02061ca89ba56d1dfedec *R/dd_loglik_M.R
b9c38a612c320139181a3ba101f791c4 *R/dd_loglik_bw_rhs.R
05c5b3c28b89b481fb580f2abe8cb960 *R/dd_loglik_choosepar.R
97acdb53dcf0918392780ca4097e898f *R/dd_loglik_high_lambda.R
38de964812095db1a5a4ab5e7da43e88 *R/dd_loglik_rhs.R
a5cc17840c29a39ad6cdcadda6fdbe19 *R/dd_logliknorm_rhs1.R
fc3365dff57aa9a45b0a170b792e24ef *R/dd_logliknorm_rhs2.R
667f21f1ab96a95e6da3388469d6a974 *R/dd_logliknorm_rhs3.R
f87386881bab906e427b4d3f7207297e *R/dd_sim.R
853d3b7443bd9889611933d1f356c21e *R/dd_utils.R
98c5f95bb8446e46796099a8421aed7b *R/lamu_dd_td.R
716ebaf1cac50a4310eace08b7c257a8 *R/td_loglik_bw_rhs.R
7beb87ca9d94b55f86b727867b8f8f1a *R/td_loglik_rhs.R
26f1d403c373460ed6eb8b2758e8debf *R/td_loglik_rhs_sim.R
3e3600ac2359f3e389572198b85a13c6 *R/td_sim.R
cb3b20077bebc5da31fc1b46c657c0ff *build/partial.rdb
fce8b061a63c5aeaece20975992dc179 *man/DDD-package.Rd
b2f870ad704f523512a39e6ab4c11c64 *man/L2brts.Rd
af71efadda994f6a4704f9ed1bfe7491 *man/L2phylo.Rd
b334212e3f78159e0e8e77ab8ea943bb *man/bd_ML.Rd
bdb8591959214df93500f21e11e83408 *man/bd_loglik.Rd
8367d01bcaea15a4b01d0dee4a444f08 *man/brts2phylo.Rd
405abe71a7423c7ad9a679102578e55f *man/conv.Rd
c29c9f93039f28d640751a12b446f74a *man/dd_KI_ML.Rd
8e79eff44afd34834e52af406d09deeb *man/dd_KI_loglik.Rd
718c58def3332fe89d5518f7037417bf *man/dd_KI_sim.Rd
5e76bdcd27dde05b787520a50e34b7cb *man/dd_LR.Rd
b70a2f631a8dd7c0f1e7c896f22267ff *man/dd_ML.Rd
e46bd11be628d27e685528e17364d52b *man/dd_MS_ML.Rd
01c4a822354286369a70e3b3d6b1b0aa *man/dd_MS_loglik.Rd
6e7c41c4244722906f16fd970007d6ec *man/dd_MS_sim.Rd
dad55f799fe0fd0e2c9d2d56e9d85ab4 *man/dd_SR_ML.Rd
4cc77a31e9b791bc92b8fa5c1fcf761b *man/dd_SR_loglik.Rd
968d5b5d4b5c18614227a163edb05c90 *man/dd_SR_sim.Rd
592dc7fc4a83ed11bf176491d8c96dde *man/dd_loglik.Rd
f2c0dee8d63d9ef259b278ae4482cc71 *man/dd_multiple_KI_loglik.Rd
4d3af83887dea720ff47cf48231231e6 *man/dd_sim.Rd
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
3c287a2aa25fb63b056ee847646df35d *man/figures/github_actions_logo.png
866326c8b78a021ab7dc0c3e3233222b *man/optimizer.Rd
068f63b3804c86371072e3e0a2503bd8 *man/phylo2L.Rd
2faf49825d5492d2cc91871bdd3998bd *man/rng_respecting_sample.Rd
4bce6ecb34d9ed7cf0d3aaf4af72e532 *man/roundn.Rd
ca504a2da45df3555b462cee3486a902 *man/sample2.Rd
6ba806cbf75513cfb2194869cdcadd1f *man/simplex.Rd
b942a59119dc7ce62ed522658d437b72 *man/td_sim.Rd
0810dd1b5f4f82d84abe37046102628a *man/transform_pars.Rd
6789e9c78d8785796bdba1b3d31b72f7 *man/untransform_pars.Rd
5239a6daed14ab0ce8b4d3744931b2de *src/RcppExports.cpp
b860b8dc01bf42040c8a6fccda0c2b96 *src/config.h
11c32fed389db10d72d948b77f22c5c5 *src/dd_integrate_bw_odeint.cpp
7fed6d6b64e42994bbb87304959d91d5 *src/dd_integrate_log_odeint.cpp
a09613c3051257cbd98805b8962e4c2e *src/dd_integrate_odeint.cpp
e3143e0a106dee7a359d260c4838908b *src/dd_integrate_td_odeint.cpp
e303976c221b26d3bc1a25fef8814af1 *src/dd_logliknorm_odeint.cpp
961f50fc8f43c58571c5fa12ecfbf10c *src/odeint_helper.h
34fd170136f60cea7ef3896951bbe6e7 *tests/testthat.R
4358457520ce78d4ab774957caa38ed2 *tests/testthat/test-ddd_sample2.R
b9cfc4a6beb5789e90effa1adc8cbced *tests/testthat/test-optimizer.R
7801f52eb8587f5da8041c3a7e00bdae *tests/testthat/test-rng_respecting_sample.R
e9e53312be16502edb3ad9e24710e7bd *tests/testthat/test_DDD.R
c3d3f162eae2f61cd21e379bde439317 *tests/testthat/test_pars_dd_loglik.R
