4548fa12eb40a45bd44bdddd1d9e9f9c *DESCRIPTION
a6cfbf2b92d48d7899006614cb4b3cb5 *LICENSE
b32da778b0f06db3ef4f6c119eabd895 *NAMESPACE
458125b806f0b19107eeb90f7fe5af03 *R/apply_neighborfinder.R
c414dc7e439c089fe7cba71a8fa54527 *R/apply_nf_simple.R
7482b152a679f0947073f7d6efa1fbd4 *R/choose_params_values.R
5fcdcb6676aadf88a5ecef596b973317 *R/compute_precision.R
68f797504af39531cc2cb4f82707eade *R/compute_recall.R
beb7e0902f5558114ff1729bfdc0461c *R/cvglm_to_coeffs_by_object.R
ffe83cd140007d76369415a37bd2fc0a *R/data-for-crc-patients.R
144850237dc161836ec407c88d48d493 *R/final_step.R
0ead1e3029f10a0839fec783a1a7394f *R/find_all_module_neighbors.R
bdae675d0019e6a44e84533b2325d84b *R/find_module_neighbors.R
2f6cd6b3247eab5f0baf27f471690df7 *R/get_count_table.R
78bd1017e966f8b56355074420a22a52 *R/graph_step.R
1c33e3b54829892ed7af37dd8bf526bd *R/graphs-for-crc-patients.R
2128627b8f98ad3d6d3568672d61c18b *R/identify_module.R
d094e5efb85990acad9229ea61e3d267 *R/intersections_network.R
14fb6ce1c947dc8f210483602a0014c1 *R/intersections_table.R
b3050a48c8e78d43ed2f2973da0bba87 *R/mclr.R
027e386ca0b81e402229ff034f14cb50 *R/metadata-for-crc-patients.R
02cf4accc583f81b080d8277e338d9f8 *R/module_to_node.R
57a1582257f1ba98947b1860548d8364 *R/new_synth_data.R
2c5f40d5b30b5089a41cc9890a1cebe1 *R/norm_data.R
98736bddc51ba545767f70a4d33c293a *R/pipe-function.R
761e2bd4a693ee5323dd9d24c9491d80 *R/prev_for_selected_nodes.R
9658448c894ffafe187816c051b30434 *R/result-for-a-use-case-example.R
36f3f6dcc8e74544ba93a73677666f1c *R/simcluster.R
d0e157a47585427325b776f740659939 *R/simulate_by_prevalence.R
4571a9ea1bac6ffa2a3d47650f5ffec4 *R/simulate_from_ecdf.R
dcaf9b36623defeb7cbe1763133fef15 *R/taxo-data.R
ce7c54a58c1a7f290a4b9878ec5440db *R/test_filter.R
b7204e634f33cd9f393c7881d726c401 *R/truth_by_prevalence.R
71e6a7cff2737882789669659c8af662 *R/visualize_network.R
88abf3bc83ec1b22c9f54aaa87072e46 *README.md
533839446f70bde34a1050627ce80586 *build/partial.rdb
53a7d0be201ec382ba2586c5358016ec *build/vignette.rds
57eafeca1602e331c426e712f85b27d2 *data/data.rda
695b8973eba617543733915001a5cd21 *data/graphs.rda
1b76f36765559c81814baf1ca9b276d4 *data/metadata.rda
5dec8b77ee2caea2e6119a831728d511 *data/result_example.rda
842f82b08e7730329c39c969f210a5a1 *data/taxo.rda
6159c4cc0de346b6407077427c11e36f *inst/doc/NeighborFinder_technical_report.R
443d14977c8ecfe5d28fed60a60a56c6 *inst/doc/NeighborFinder_technical_report.Rmd
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ec3af4e35336c12d9036331e0e63162f *inst/doc/NeighborFinder_vignette.R
2de39ac0eb501db2bc20a02f30da5eac *inst/doc/NeighborFinder_vignette.Rmd
d1965fc7c5dad4a0a43a345f9ec6cb2d *inst/doc/NeighborFinder_vignette.html
46dd48701571cd68d4092b4465d12a4e *man/apply_NF_simple.Rd
9da2d0e3101abd2b3212940de40fa20e *man/apply_NeighborFinder.Rd
cad5729d1f67c31ff25b1d5441050bc4 *man/choose_params_values.Rd
d5abb88263f9f36ee93d8ea24b572547 *man/compute_precision.Rd
46e805fccc8bf4bac6e898bccf7475ca *man/compute_recall.Rd
61f33d867f39562316e48622d2adfa76 *man/cvglm_to_coeffs_by_object.Rd
2240d6d73373140780de1b617dc4f42b *man/data.Rd
d1b0038ae939c4ed293d766e91ca3da1 *man/figures/Logo_NeighborFinder_black.jpg
0c3ac4ecbc1abd1b00f151b0f89974a7 *man/figures/Logo_NeighborFinder_white.jpg
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5509c9256c7ecdaaae6973170711d250 *man/final_step.Rd
f923dd7ae2a3e2251559852782c75a59 *man/find_all_module_neighbors.Rd
ae5141b85f3c03c9edbac9e43f81fa7b *man/find_module_neighbors.Rd
a0300fd13fbdaed6772f56ffa737c033 *man/get_count_table.Rd
2e83c23457911ba85c9c0bec5355b048 *man/graph_step.Rd
ec995c561c9200b3c5bcba81326ebf2f *man/graphs.Rd
8d90f1457f2811235156daaecc7faa41 *man/identify_module.Rd
b7c24d5404cff9e965863378e39615d7 *man/intersections_network.Rd
ca2bed99bf2b2c6cd85c6781ea0526a6 *man/intersections_table.Rd
2ae3a35f22800ca791636e4fae5e2f5a *man/mclr.Rd
632f7f5de053641dda16caf2ed9eaf7b *man/metadata.Rd
007952ce1e19def42619b14a6641cb94 *man/module_to_node.Rd
09f3a89660d22411f94009ced25a3187 *man/new_synth_data.Rd
6a845dda732a60be2a3a16a59f747296 *man/norm_data.Rd
647b86deced6a1c9c61038a7c1cf365f *man/pipe.Rd
ff5aa937254329eeceff628bc8f3a76f *man/prev_for_selected_nodes.Rd
7ac3012e5c24a2ab8ea7b2ab34c01b6e *man/result_example.Rd
9d9089b713bae3437e9335b1864b9062 *man/simulate_by_prevalence.Rd
96f23ea789ad7ef09a99ba8f5ffe52d9 *man/simulate_from_ecdf.Rd
82c2e94651d3b7d07f37116f82b9b09d *man/taxo.Rd
bb29496307b7cd4bb95c00054d02badb *man/test_filter.Rd
777bd51ea146d9e8a37a2d350865709d *man/truth_by_prevalence.Rd
f3467f0f2501017133ebce8054ebcfe4 *man/visualize_network.Rd
829ea4441ade9332bc01a5dff5cb624b *tests/testthat.R
05986097d5bff85ef79b87ab2b31d700 *tests/testthat/test-apply_neighborfinder.R
1974804439dfe48a705f59a65d208635 *tests/testthat/test-apply_nf_simple.R
423b9c770b7bc086f7ed7b617f96a34d *tests/testthat/test-compute_precision.R
a14d622724393887253d58285b5a7cbe *tests/testthat/test-compute_recall.R
ece4e5ab08eed664f9cc9cc6566d3076 *tests/testthat/test-get_count_table.R
41e1c8d3b0807b52817301a5f05a4869 *tests/testthat/test-graph_step.R
97c44b233be7823572026d29f21f29a1 *tests/testthat/test-identify_module.R
73846ac6ed1b111f58455b8d0901e8fb *tests/testthat/test-intersections_table.R
8e6db9ea3cfffc491b21443fdda4b2cc *tests/testthat/test-module_to_node.R
12cc8bb60418863ae3cbf6d43369a3f1 *tests/testthat/test-norm_data.R
6a90e001504e0d2d29661dca343cc227 *tests/testthat/test-prev_for_selected_nodes.R
5a640b5b175ee8d919ece759c2282e2b *tests/testthat/test-simcluster.R
73150faa159007b73207a371d74a37a3 *tests/testthat/test-simulate_by_prevalence.R
3d8f4c1bf2645acb3e19b75e75a16c3c *tests/testthat/test-truth_by_prevalence.R
443d14977c8ecfe5d28fed60a60a56c6 *vignettes/NeighborFinder_technical_report.Rmd
2de39ac0eb501db2bc20a02f30da5eac *vignettes/NeighborFinder_vignette.Rmd
e83c8040335e09780b59c318a3d9c790 *vignettes/Technical_report_figures/fig1.jpg
caa6de5e4b09c7594584c634727fa601 *vignettes/Technical_report_figures/fig3.jpg
2db417ebbcf2d01eca0c43a16d660671 *vignettes/Technical_report_figures/heatmap_100-1000_appnote_NB.jpg
93c73ebcabaee651d0ad4ab8d0b8913b *vignettes/Technical_report_figures/workflow_top_only.jpg
