261bfec1df64fb0492ec4595037371e0 *DESCRIPTION
6ca6447f28852321485e5c065ac2b87f *NAMESPACE
ef11605391cebfa0950e349e7b6effc9 *R/RcppExports.R
2d88cafd91cb4dcac73a15a6af8a270e *R/bayou-custommodel-input.R
c58e8a3a6bd48d01f7f66cda30932dd8 *R/bayou-deprecated.R
8d793dedd6b2a12fc98aa17b2683a63e *R/bayou-likelihood.R
caa22b12b70f401dcb0f7cc727c1c904 *R/bayou-mcmc-utilities.R
8b162135eba311fb3f4417e97d5b82fb *R/bayou-mcmc.R
56f1a35d7c5dd8805108beb138c38aac *R/bayou-moves.R
6c7a80bdb179f2c0f81141827ed2521d *R/bayou-package.R
8b02e97b569d053a023dc18a43e0e5af *R/bayou-plotting.R
e7b5270b737c5ebec19d40edb94612fb *R/bayou-prior.R
9c2d77fa8fbf6dc7bc31e945c037d7a7 *R/bayou-simulation.r
c8e097aee5b5ec63d83300ba6d3edf56 *R/bayou-steppingstone.R
c805ea4c8140d6be200e49b0b6e27805 *R/bayou-utilities.R
77fc6eebdf76602e7fd00e4bcf944b03 *R/bayou-weight_matrix.R
ec57fdfbb2392a4c3dd4716987c3c14a *R/conversion-utilities.R
d6011eecdd00ee76bb9a632632b0f027 *R/probability.R
f228bc6dae60c9cffc6a5026797ece7e *R/teaching-functions.R
861e837a7d3530c24a4adb465f1f55fa *inst/tests/test-data_load.r
f689ccd3b42f9529652a6103b2b9fccd *inst/tests/test-likelihood.r
8be78efd3e77cadc673e78461f9b9fb8 *inst/tests/test-prior.r
05db4e7ecf0e39b259d74cecea3c8372 *inst/tests/test-weight_matrix.r
70e5df41e6feca843126dec74b57af49 *man/Lposterior.Rd
6e13245edaf4a31efa703bcfccb07ffc *man/OU.lik.Rd
28fa895f61aeffa76bd1e5ace0e5ec2e *man/OU.repar.Rd
94ce5fdddcc78b1d881398844196ea30 *man/OUphenogram.Rd
9d82a58e3312a172fa1750db455e7ae5 *man/OUwie2bayou.Rd
35bdfac6ab7c4dbe572c228f726b1e71 *man/QG.alpha.Rd
ad6450f96a74459a93c0ca7104b07a8b *man/QG.sig2.Rd
e2de03d9901dc8ecf501105e12666529 *man/bayou-deprecated.Rd
9738409faab05a6245f6f06863c8b090 *man/bayou-package.Rd
d06b8985a488ea3d001be796ac156da8 *man/bayou.checkModel.Rd
6e0a161dccc272adbd562b2c5e2ea999 *man/bayou.lik.Rd
a724f7a5bdd5349d5ce4596ee6d15a0b *man/bayou.makeMCMC.Rd
1ada5d773d1255f62c3b6aad8f98d400 *man/bayou2OUwie.Rd
c32e548706d954ed06892101e36954db *man/cdpois.Rd
91916473a2a6107b4902d7c6c9da1fce *man/combine.chains.Rd
ff4fbf959fa57e866b1a1fd29ea0931e *man/dataSim.Rd
f39031874e12702e676df07ce955ee2e *man/dhalfcauchy.Rd
5d046d93009417c603c6879af5aef686 *man/dloc.Rd
51a46d3a54feaafb331be91f97e8ce46 *man/dsb.Rd
71e6c452a44c740fb1ed936c21a1e47f *man/gelman.R.Rd
458a477a9b3292aa56ed7be4c4ba6dbe *man/identifyBranches.Rd
5d50c7134b3097883ad8417f38d08e08 *man/load.bayou.Rd
ce650842e7a554c7a0b869f4b3ebbbac *man/make.powerposteriorFn.Rd
fd0814e837aa19c17c8441260b6fb462 *man/make.prior.Rd
376a75bdc390cb7ee94685c25151a558 *man/make.refFn.Rd
7163d8bbf482e372109879ff181c61cc *man/makeBayouModel.Rd
7e6d6c64136f432cf7f2312415118527 *man/makeTransparent.Rd
a0cc76d2929a08c9e9efcf879edf8183 *man/model.OU.Rd
cb71b9bcb83ce40b2aca5c25a4d6fbdb *man/parmap.W.Rd
b1a3d6ab7b1b89f798c0594d85e5af2d *man/pars2simmap.Rd
35a5a43358cda2709d87df00a651b0a4 *man/phenogram.density.Rd
f82a087bacafbac95d5fbf6e4c503291 *man/plot.bayouMCMC.Rd
9cec432112bd0336bbec063a18209eb9 *man/plot.ssMCMC.Rd
b5892acd6447455b49f8b3e0391fe31c *man/plotBayoupars.Rd
506392f671517e6e729ec8378c427ab5 *man/plotBranchHeatMap.Rd
ba08cca73603629e160da0f09ee61c2a *man/plotOUtreesim.Rd
c580a119cd234ac398a1f12fbc1efd6c *man/plotRegimes.Rd
cbe957070178e4200328736c11ddc68d *man/plotShiftSummaries.Rd
7d42371ae9392f15ff39d56f10bf6afd *man/plotSimmap.mcmc.Rd
9a7a94fd4c5e66229bf70f1b200946b8 *man/print.bayouFit.Rd
705754bdedc913638c406055f2c52d5f *man/print.bayouMCMC.Rd
edad187cd110f9254ce50f29391ea36a *man/print.priorFn.Rd
449b10e36a767d7d6394c9b953cfe2e0 *man/print.refFn.Rd
88f000d91da46bf2c73b3592847a8622 *man/print.ssMCMC.Rd
b550989931b2acd9a2cc0fe5bde2023a *man/priorSim.Rd
df1bf1f31d446b4bd1fe9026bf119e10 *man/pull.pars.Rd
970566326752e25e1575aec40bdbae1f *man/regime.plot.Rd
b2686b9f77158db75129d1432badaad3 *man/set.burnin.Rd
9659f9ee26bb854f73996110813c128c *man/shiftSummaries.Rd
5791595f8b88e6cb91a9f570c42809ce *man/simmapW.Rd
dcfedc7322585b539b660aed13eb9161 *man/summary.bayouMCMC.Rd
00ae6e316667e03e3cd1922ebf1e1dbc *src/Makevars
2a5fd581cf1c16b4d7f5d66e98fc4be6 *src/Makevars.win
7705204c00325a146012fc5b0dacbc85 *src/RcppExports.cpp
a1aa4f70420fcb3b1da8bbdef181705f *src/branches.cpp
694f2cab020583cc19ec3ad459785165 *src/threepoint.cpp
094f2abd6f41e8c0c612a2032dac01e8 *src/weightmatrix.cpp
