66b5b3506995b9ef230c41bf0fb57788 *DESCRIPTION
2d58b1f598db62766190a59383d7bae8 *LICENSE
9603d4d90c8d557cc306af182b81beb6 *NAMESPACE
e0bdfdb438c9c389f7fedeca293871b8 *NEWS.md
757134c2a46fb0846974579836de326d *R/collapse_probes.R
a9b584c3eca9767d53d60b58a247c6e3 *R/cost.R
4f693755cc92e819e4fd9e0dae4d8033 *R/fit.R
e2c298f109fbf282c711cacccb95fef8 *R/gsm_id.R
94cada8d2dfe2e5c3c87c545e3948c61 *R/pathway_markers.R
061bf4a5b1ec8b912398b65f2346e9b3 *R/plot.R
b365c5d03f1fdfbbcd0f42d37411d7b1 *R/sc_interface.R
66493ed2cd305f12601b67a858254659 *R/score_pathways.R
5f97c34437e205487939bab98da6d2d6 *R/simulate.R
9884501a6a6ba8962978ce7175488b65 *R/solver.R
175527bd21b22aee8c5d1857b4bb7726 *R/tar_utils.R
917d02fe0ba2382a0f710378d535d2a6 *R/transitions.R
f3830434e096bb24c0924e37c05e1024 *README.md
4e536eb8606466e04e3483e3190d287a *build/vignette.rds
87e4d29bbd79b5421d4df41bf65831f8 *data/demo_iot_states.rda
85bc4322ef87173f5e81e7c84ee57f72 *inst/CITATION
a5feeaa4c4d9d345e3a94902093dc78c *inst/doc/bioIOT.R
83af6166f3ce52d49e1fd5057dccc865 *inst/doc/bioIOT.Rnw
820852275e23ad4952c610762cf95a9d *inst/doc/bioIOT.pdf
247a41b879a60012aef75a9fbd27f6e0 *man/collapse_probes.Rd
074f81bbee7bb2f7a552d7b0b95ffb06 *man/cost.Rd
b44b9a4660fa536d85a45cc0cbb4eaa4 *man/demo_iot_states.Rd
09576a4f05a7d052522611aad5991d29 *man/fit_iot.Rd
805c42a44a4b8785c8a06423d6807f61 *man/gsm_id.Rd
8013d9c121901cd956d626b2e3b033c1 *man/pathway_markers.Rd
cfa562d82b6c0809cdfb4a3db8634193 *man/plot.Rd
d2bbdf02d550452b77fca6381c40a413 *man/runIOT.Rd
58f9e9c89dcef4d98853fe2aca1c9afd *man/score_pathways.Rd
b66bd7223ab15395539d983c880743d2 *man/simulate_iot_states.Rd
4992d152e50de7413514ae777756399a *man/solver.Rd
ef9dfa0f9b0247bd266f61ee272dba67 *man/tar_utils.Rd
dc1a10a6a4808d87652077ae83a1e401 *man/transitions.Rd
a44c205059112e638abde4566ef8e484 *tests/testthat.R
a1be815326eccefb1453c15c9fee095f *tests/testthat/test-basic.R
c6197f9dfe0bc6a3c8375dd36aef64f8 *tests/testthat/test-fit.R
88650344aedf2938a7c2f4a4a3b1192e *tests/testthat/test-grad.R
f66fc77cadb5c4e9182c3aed9f1b5f08 *tests/testthat/test-plot.R
e69731877772135f4ae20fc5c4cec10f *tests/testthat/test-sc.R
da88ddce3bb9093c1a857c29c0892660 *tests/testthat/test-simulate.R
481832170aa58dc1e99dec1de7b26baf *tests/testthat/test-solver.R
723a260e7d1903061387f24504d58707 *tests/testthat/test-transitions.R
83af6166f3ce52d49e1fd5057dccc865 *vignettes/bioIOT.Rnw
