5f54ea6a8a0c52b31400081f40653a15 *DESCRIPTION
859c29ad93402c5ccc7aad0f59446ae6 *LICENSE
56adce73ba0aacbf89e7e8091de16df3 *LICENSE.note
36f2ac10e94d599eeb36e5e17b8fe5cf *NAMESPACE
f9dc958bd6c6dad36102f65d81ef89ac *NEWS.md
2da1b41dbc521de138dea6262ebfef52 *R/defunct.R
edc24e3757eca5480e946fa1fafad7b2 *R/iRfcb-package.R
cb117b124f69481faaa24bbea0af3168 *R/ifcb_adjust_classes.R
c973766e6e35666199aeab8a2561a83f *R/ifcb_annotate_batch.R
0f534995e0178ac764d55ecef2ee58d3 *R/ifcb_annotate_samples.R
b8fe95fc171c1b36a4478338cdd2a4da *R/ifcb_classify_images.R
f510a73f16b94889f03403b1cd7dab70 *R/ifcb_classify_models.R
9b9068616e3f960e732b8c2525402aa0 *R/ifcb_classify_sample.R
5fb3dcf2c86370cc037c74bf34f070a3 *R/ifcb_convert_filenames.R
5bca4d5f9af0ebc2dd5976e8183af455 *R/ifcb_correct_annotation.R
cc20f1ab48a6f6e88d1dc6a5625324c9 *R/ifcb_count_mat_annotations.R
b4b30abab05484c787888b835c435bba *R/ifcb_create_class2use.R
53434cf3428f905d60c55f0145406b33 *R/ifcb_create_empty_manual_file.R
2965823f5a818f131872217277a7c4cb *R/ifcb_create_manifest.R
3314d2791e24b610ea545eee1afa15ce *R/ifcb_create_manual_file.R
004a61b49d93bfb99d7215a9bb578701 *R/ifcb_download_dashboard_data.R
552da9fc2206071138be306896148814 *R/ifcb_download_dashboard_metadata.R
bf4cf0bfacb87cd47e62c180bfa4dbab *R/ifcb_download_test_data.R
4dedfbd92be1880270a5f66886f9b56d *R/ifcb_download_whoi_plankton.R
86fc7ebbdb518f715b14a19a50ee633c *R/ifcb_extract_annotated_images.R
ca080b25ae3f7ed2e1d93e6c5856fb92 *R/ifcb_extract_biovolumes.R
4965cc3ed0bbf06d447d3b67d026c364 *R/ifcb_extract_classified_images.R
ca494229d492bb7e3c282ec70ef1181b *R/ifcb_extract_features.R
aa1590b035c175133d8421efe9947ec0 *R/ifcb_extract_pngs.R
8425b408fe92911089e2eea94724d846 *R/ifcb_get_ecotaxa_example.R
7146a628c2bb7915961a99e476d9796b *R/ifcb_get_ferrybox_data.R
2f290c263916962f1d4e9081e8f75203 *R/ifcb_get_mat_names.R
b857afbcda60ae6de104884c868d7a32 *R/ifcb_get_mat_variable.R
9518f899b3ad55771e8844f803aab0b0 *R/ifcb_get_runtime.R
d1d404dc1cdbc79a049595be106217d5 *R/ifcb_get_shark_colnames.R
16544388cb5c9c4d2e89dce5dcc44d72 *R/ifcb_get_shark_example.R
783c5b5b48d16226f9cbe662e177cd4c *R/ifcb_get_trophic_type.R
f247f3a8cfc9ca17139a15fa69720764 *R/ifcb_helper_functions.R
c00dea3ab403f4bfdc2def0b651165d2 *R/ifcb_is_diatom.R
52a4bbf80c6d4901d74fa89ec94a041a *R/ifcb_is_in_basin.R
2d37966b7f4ad2cb24f4a6f5f3714cda *R/ifcb_is_near_land.R
feefabe482cffb022e1b0c421a777e12 *R/ifcb_list_dashboard_bins.R
0f8be3438e980779047914944b0c30a7 *R/ifcb_match_taxa_names.R
086d047e82b3c0c760b7caa8d8239c59 *R/ifcb_merge_manual.R
4e1ee2523e7c990d211c82e7b91d6404 *R/ifcb_prepare_whoi_plankton.R
85369d1755ec167a7e3636ed827ea614 *R/ifcb_psd.R
4149df77e02a708061df9b9814645330 *R/ifcb_psd_plot.R
7a96fba58e48f457caee857914cf4989 *R/ifcb_py_install.R
df6b124a35c7879ab05156a379f074b6 *R/ifcb_read_features.R
f5dffe405191ca2e068276676093e407 *R/ifcb_read_hdr_data.R
a77dcfb5f27baa56605ec5c172652e36 *R/ifcb_read_mat.R
fc631fd7392ae872b8e71326196f94cb *R/ifcb_read_summary.R
e06da8c174c49aefdd79f2e3ab2882be *R/ifcb_replace_mat_values.R
684345d2dc978b48bf3d4c287d13f392 *R/ifcb_run_image_gallery.R
8a2ac4c5517579f461e6821f566bf9ae *R/ifcb_save_classification.R
6d2e7f7e6cb304fb59c7b92643ff2f7d *R/ifcb_summarize_biovolumes.R
b4b9f62c1417ea68fd9e4178420f07cb *R/ifcb_summarize_class_counts.R
cfa34e600c72b8657ed1acd1fbcb7d6c *R/ifcb_summarize_png_counts.R
5d821f670b132574d6d1270201171ad3 *R/ifcb_summarize_png_metadata.R
def9b6ce40932459da0226ad711130e7 *R/ifcb_volume_analyzed.R
b5bb36baa3e9218a9bfb2b01bc8328f6 *R/ifcb_volume_analyzed_from_adc.R
16c15d50fb18de151588bea4cef125b2 *R/ifcb_which_basin.R
abf52e3b916f5bfce2b92f605ccf6bd5 *R/ifcb_zip_images_by_class.R
da2d3c9034b444c6491d927c9aaae499 *R/ifcb_zip_matlab.R
daeb3d364cf16ab42b1e605aa378d54b *R/ifcb_zip_pngs.R
5edfa66bb9ec84f115a0976283e3e793 *R/zzz.R
248344b620527a97c8767f220600c903 *README.md
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
9d30a4a5e98fff0d346e20e6b0743e7e *build/vignette.rds
452c0f374979a232985b4d79c2c4f1dc *inst/CITATION
57cc640128203b7d09b30477b6cb001d *inst/WORDLIST
028733fa2c7735e3685894eaf17c24e8 *inst/doc/introduction.R
15c102f1c31e06c79a0c1fd6816db88d *inst/doc/introduction.Rmd
c4ab0908e2ff5e520a55e62188bc3237 *inst/doc/introduction.html
d41d8cd98f00b204e9800998ecf8427e *inst/exdata/D20220124T144202_IFCB139.mat
0071ccfe4df8a3306610c75a14a73fcc *inst/exdata/MATLAB-template.md
e6e4ed03529caf0fc16ecb581f883692 *inst/exdata/README-template.md
82ae2f3779a93d93a72d3d064f1eeb6f *inst/exdata/baltic_sea_basins.zip
740f291a966ec3dbe1f3417ec5b4e12b *inst/exdata/baltic_sea_polygon.zip
ce0a480b10ca49ed8073f0844bbe72c0 *inst/exdata/ecotaxa_table_minimum.tsv
2af3749acec66424d24eed8076723c28 *inst/exdata/ecotaxa_table_with_classification.tsv
fae5a3fa06b88397499fad03532797b1 *inst/exdata/ecotaxa_table_without_classification.tsv
36c411430db71cf307dc2e4bf8741816 *inst/exdata/example.mat
a0e0c3fb962ee0f51516f9a4da918b12 *inst/exdata/example.txt
a0b16b851ea14d97cf98873aaa0d435d *inst/exdata/example_ferrybox.txt
87fcca19075d8c7395991ac39128ddc9 *inst/exdata/example_summary.mat
8f508de3ed5afa2135a77256ca27ada3 *inst/exdata/example_table_ifcb.tsv
be3001f37196d2894e17aacd13ff2cc2 *inst/exdata/ne_10m_land.zip
6e59636c24b43012ced60ef22f9a851e *inst/exdata/shark_col.txt
3314049f9874436797f48b61bc366430 *inst/exdata/trophictype_smhi.zip
c1e9ced76a153302fa2ae3603a40cc5a *inst/python/create_manual_mat.py
f6cae16934677aafb7a8eb3e13f4e884 *inst/python/edit_manual_file.py
eeb9d485fb648caec0786ce286cc615d *inst/python/extract_slim_features.py
5764b78679b0ba62aa9bfbfd399c8a27 *inst/python/psd.py
9b020b32f08cb69dca4db4dfae6720a4 *inst/python/read_mat_file.py
937b244f1ec2e6158a815c490cfd75df *inst/python/replace_value_in_classlist.py
338481bc996096fccaa9991e579216d6 *inst/python/requirements.txt
b8116161cf9d5d40852ed71abb5c3b36 *inst/python/save_class2use_to_mat.py
1bef8bcaf0d7e76b2a7ac85684084d34 *inst/python/save_class_mat.py
c25b28b8ea6ce2dbd61a2ee701c92692 *inst/python/start_mc_adjust_classes_user_training.py
cbb85f19ae558c432bd6d4bf77e95dd3 *inst/shiny/ifcb_image_gallery/server.R
0b2cab918565e402d4dbedb752f205ee *inst/shiny/ifcb_image_gallery/ui.R
b850e6b5fce9baded668831b2069faef *man/create_package_manifest.Rd
944e581e291802aa672cc3cc6b8627e8 *man/defunct.Rd
32e735dca18b1b6247e46c5a9c95f70b *man/figures/lifecycle-archived.svg
926dda7c74d388ae3fd7476122ffa0ba *man/figures/lifecycle-defunct.svg
8b9317939d546a8bd0ae4da30c658f78 *man/figures/lifecycle-deprecated.svg
e1c8d33150e179ed17231c575895092b *man/figures/lifecycle-experimental.svg
44654a4153801346834ce7e52a8b5175 *man/figures/lifecycle-maturing.svg
4c06af5b86c85bd056c98ba391c3f82e *man/figures/lifecycle-questioning.svg
b299be1b0cc513f05fa0a8f952f76c38 *man/figures/lifecycle-soft-deprecated.svg
383d1a195cfb97ae7af9a37a877b88eb *man/figures/lifecycle-stable.svg
6920593141a53e9e05a9d7c6fd393650 *man/figures/lifecycle-superseded.svg
967f6995ef4cfe6ae96180d10c21c654 *man/figures/logo.png
d6a250cc32363fb7df6cc6a3e8e7a028 *man/iRfcb-package.Rd
374232f70dd34cce04020e3594ed45c4 *man/ifcb_adjust_classes.Rd
b71c55d9c64f14ccf94c423beb7f2bc0 *man/ifcb_annotate_batch.Rd
c6e020f2177ace39a955169cf40a37af *man/ifcb_annotate_samples.Rd
39d28873a13043be36b87cf71a416fb0 *man/ifcb_classify_images.Rd
5886d60810604a511414ed26537bd400 *man/ifcb_classify_models.Rd
fc924d6f342833b653a078848807371a *man/ifcb_classify_sample.Rd
16ba1e670260ab887a1ce2615ff3b5b2 *man/ifcb_convert_filenames.Rd
89f8954eca8bc764c1ce59938247c594 *man/ifcb_correct_annotation.Rd
1931b0cd6546a3a127f158b60dc8210f *man/ifcb_count_mat_annotations.Rd
3b7790bf57b697b3ad7aba44466f9ad0 *man/ifcb_create_class2use.Rd
2616f0e1bb06838299bf79859945744b *man/ifcb_create_empty_manual_file.Rd
125d9fd60539eee8276031a2e3101244 *man/ifcb_create_manifest.Rd
3ec4013f29e71a0852a66815e8193d5e *man/ifcb_create_manual_file.Rd
1ffe541b9a4c9e35a236d567c0c91e47 *man/ifcb_download_dashboard_data.Rd
c4ccf16da84268642471b1a83d1f0ce5 *man/ifcb_download_dashboard_metadata.Rd
2623a673a9fb162f718eb673f3cec9b3 *man/ifcb_download_test_data.Rd
55e4b79be8538a3fb4bf63aae84e04f2 *man/ifcb_download_whoi_plankton.Rd
ef08509cd3817828916e8de83c94a334 *man/ifcb_extract_annotated_images.Rd
2188b1a2551d58edcb585cb3b27d13c4 *man/ifcb_extract_biovolumes.Rd
42e451efa2fc72edcc194717352ec441 *man/ifcb_extract_classified_images.Rd
86212eb84030271c34315502e45241ce *man/ifcb_extract_features.Rd
ee19a8f92df608485f93d10c83785fbf *man/ifcb_extract_pngs.Rd
cf09223e4224d15312d6ca857d2e75d5 *man/ifcb_get_ecotaxa_example.Rd
caf49a717b044a2c8a435afb4998b3f3 *man/ifcb_get_ferrybox_data.Rd
37ff76e609cdbe92fcb9797c0bf806ce *man/ifcb_get_mat_names.Rd
266ab97080987006253ccb008e03f709 *man/ifcb_get_mat_variable.Rd
e40f84ea3bd207b084200be39b761e0c *man/ifcb_get_runtime.Rd
07d89dbad124f2eedb1f49d03ce05f68 *man/ifcb_get_shark_colnames.Rd
3f8317573d4bb8397e8ca2f2182f37d8 *man/ifcb_get_shark_example.Rd
3586c84f50ccdbd6596d52bfdc117175 *man/ifcb_get_trophic_type.Rd
551b069e6cb0b8c3e3bc53ed2bafde0d *man/ifcb_is_diatom.Rd
b9f1172e24227da159bfcb2bc262b499 *man/ifcb_is_in_basin.Rd
f614e2df664a60d1385c801dd64817c2 *man/ifcb_is_near_land.Rd
75024c5a4a8f3df98cc86cc0be3e2a62 *man/ifcb_list_dashboard_bins.Rd
f9ac8f52e3aad10934d3e663892b36ea *man/ifcb_match_taxa_names.Rd
547c76fdf0fda582e6c6e4d0a949c74b *man/ifcb_merge_manual.Rd
07517bbdc7c2a88557fc98b432c87340 *man/ifcb_prepare_whoi_plankton.Rd
04cf796bba3b10d036082190e979bee5 *man/ifcb_psd.Rd
b5ec0ca0465ab0dea5c2c2f2b6c983b7 *man/ifcb_psd_plot.Rd
75b33ae2709d4a941c309e8821dffe43 *man/ifcb_py_install.Rd
9fb162c89dd040a12871f98ea1be476a *man/ifcb_read_features.Rd
4874b3623bd869ebace501f39f714019 *man/ifcb_read_hdr_data.Rd
9f040ff1447b5bffa1b43b3d7b62ed7e *man/ifcb_read_mat.Rd
78a9bc7b14cbfbfffa83f9b64c4ce87f *man/ifcb_read_summary.Rd
cdd2dc7c87f606c60ab9627776a00706 *man/ifcb_replace_mat_values.Rd
b516152a9332cdd3b89c13d10014925e *man/ifcb_run_image_gallery.Rd
e57c05920c327f0b12b13cbaaeeed66a *man/ifcb_save_classification.Rd
b98211a27858d918e02f3373e38f06cb *man/ifcb_summarize_biovolumes.Rd
57d2f7f68997ada829fe84296e049738 *man/ifcb_summarize_class_counts.Rd
aac376f5a0c10cfee9a446e7936d9e23 *man/ifcb_summarize_png_counts.Rd
d7ac6bd0327b95a8945b2e30182a6e0b *man/ifcb_summarize_png_metadata.Rd
526f8e15fda590c185cbb2893dd79684 *man/ifcb_volume_analyzed.Rd
3242411c0327022c6a7e6d69e107b488 *man/ifcb_volume_analyzed_from_adc.Rd
e1f4044e43787a0a5d4b8f9eb7f9a9ba *man/ifcb_which_basin.Rd
2d02159f810cff3158683d0401ffa3f3 *man/ifcb_zip_images_by_class.Rd
e89dbd3a8f3138b17d33903b0b3d3686 *man/ifcb_zip_matlab.Rd
3cdb330654d44ab07854050b4510884e *man/ifcb_zip_pngs.Rd
3ddba03249fe35d2e1a6fc41474dc678 *man/process_ifcb_string.Rd
5c6aa54e748a6012d59afe9d1d891a6e *man/read_hdr_file.Rd
e9d8377bd25cc42054f338aa99b3039b *man/retrieve_worms_records.Rd
e76a9bded6989bd10e4adf4876b33978 *man/split_large_zip.Rd
95b615965bc6d282db653fa1c8305d41 *man/summarize_TBclass.Rd
aa659352f1316f54d85e364e76c37917 *man/vol2C_lgdiatom.Rd
872e946de5f18ad0edcc64a7d9cd9541 *man/vol2C_nondiatom.Rd
332173f20d20942c02019350ea4dcadc *tests/spelling.R
f7eefdf3d4e13624f3af9cc58c848d09 *tests/testthat.R
ccbfe190a1cd12aaed30be4e895bced4 *tests/testthat/helper.R
7702c23d3f6e9d9dcff6f2c5a5e6aa2d *tests/testthat/setup-venv.R
644a9ff6faaa2800a3eb0bf32cad61e7 *tests/testthat/test-defunct.R
976beebaa2da4d9dc2375763474b5624 *tests/testthat/test-get_latest_github_release.R
625953c9cc422c1df795216ab3cb66b1 *tests/testthat/test-ifcb_adjust_classes.R
47dda1416b8848b37f847589d40e2f79 *tests/testthat/test-ifcb_annotate_batch.R
f8e5f7b5c4ff5d87d15ae2812e5313f2 *tests/testthat/test-ifcb_annotate_samples.R
2550adadbd80a345a3eccce9c8209ec2 *tests/testthat/test-ifcb_classify_images.R
8a94c7461d3d4e3cd3833f97e7fa789a *tests/testthat/test-ifcb_classify_models.R
da39d5b3ce6341f6d409897e70e1a1f5 *tests/testthat/test-ifcb_classify_sample.R
a0cf6c968744b5d56187e813c74ea1ae *tests/testthat/test-ifcb_convert_filenames.R
8f0d6d95bb5705d94a265ec61ad00155 *tests/testthat/test-ifcb_correct_annotation.R
21f77dedae5c94722671523666b3b430 *tests/testthat/test-ifcb_count_mat_annotations.R
3cf2707eebc6107c1f3e52a20525521a *tests/testthat/test-ifcb_create_class2use.R
4deb0bd01f3e268411a5344478e37c33 *tests/testthat/test-ifcb_create_empty_manual_file.R
a80d9c7137cea0f6e4a5166569621223 *tests/testthat/test-ifcb_create_manifest.R
9a321072b397f9b07ea0df9efdb6e8c8 *tests/testthat/test-ifcb_create_manual_file.R
e47d0a28d8cf476076ff1c3ec121a41e *tests/testthat/test-ifcb_download_dashboard_data.R
746da45a853aef9735fd747bae6e7a41 *tests/testthat/test-ifcb_download_dashboard_metadata.R
660636326ca2ff414b13a1d1a0f381d6 *tests/testthat/test-ifcb_download_test_data.R
e48aa1d129d9249e26f8c205f65af9c5 *tests/testthat/test-ifcb_download_whoi_plankton.R
0663fa6e10a59849bc97cc1829f7c143 *tests/testthat/test-ifcb_extract_annotated_images.R
9af2f301c861f07a8afdd9afa352769e *tests/testthat/test-ifcb_extract_biovolumes.R
2f36d40e52a7dc76b84f45287840bf7e *tests/testthat/test-ifcb_extract_classified_images.R
4801d7f0d4ddd8da4c00739ed6545d1d *tests/testthat/test-ifcb_extract_features.R
448fc61556e783e26f633fca78dddba0 *tests/testthat/test-ifcb_extract_pngs.R
b56ce84cf1831b187590f909cd42a64f *tests/testthat/test-ifcb_get_ecotaxa_example.R
02a67706100c3ddeb14e273a4d912525 *tests/testthat/test-ifcb_get_ferrybox_data.R
266d687a6c3685800bdd170d8692ced4 *tests/testthat/test-ifcb_get_mat_names.R
6cf498c1070a4d1b18807066866a7b4b *tests/testthat/test-ifcb_get_mat_variable.R
cccc494d6a3ec3d476f2a4507c79ad7e *tests/testthat/test-ifcb_get_runtime.R
1b29c5f65bfa2356df67380e9ce6c56d *tests/testthat/test-ifcb_get_shark_colnames.R
3668fa7feca4b13c330612e7a47d24b9 *tests/testthat/test-ifcb_get_shark_example.R
a83d39d165877762193858283ad5f7e7 *tests/testthat/test-ifcb_get_trophic_type.R
6b4b79e80f29064deaa2f8b0eeb58094 *tests/testthat/test-ifcb_is_diatom.R
a2d27660fd07e875b905f9e1dfba840a *tests/testthat/test-ifcb_is_in_basin.R
e895b163d7a20bccdbea9d36a0ca38ee *tests/testthat/test-ifcb_is_near_land.R
4337ecfff165b8777ef94a7f8b548c82 *tests/testthat/test-ifcb_list_dashboard_bins.R
762d7848c7325ec6943ff02cffe4a605 *tests/testthat/test-ifcb_match_taxa_names.R
686bc83c07e92d1b49e6c27fa8dc13cd *tests/testthat/test-ifcb_merge_manual.R
a529b9d3a354c76d3e3c750f97d35bc6 *tests/testthat/test-ifcb_prepare_whoi_plankton.R
327898fce525b3d60b86f92e91fa461f *tests/testthat/test-ifcb_psd.R
2be2e853d603da5894b9b41242b51957 *tests/testthat/test-ifcb_psd_plot.R
49a935cfef54deec91e567c8a4e212d1 *tests/testthat/test-ifcb_py_install.R
39bc76b143978ba3951c38da97e5e51f *tests/testthat/test-ifcb_read_features.R
2a76af5ca5fc8f3cf2406accd39ec08a *tests/testthat/test-ifcb_read_hdr_data.R
6cd18e95fb24a2a489d293e0f142a03f *tests/testthat/test-ifcb_read_summary.R
6a69a440161102afd5cd4b747f8ab584 *tests/testthat/test-ifcb_replace_mat_values.R
f0f66d9de751e2ab5b85e5c992e202af *tests/testthat/test-ifcb_run_image_gallery.R
f782d8d3528d26c935c133578fc24b5f *tests/testthat/test-ifcb_save_classification.R
f76cf756b7d4a5ea874e3eb63f585f8a *tests/testthat/test-ifcb_summarize_biovolumes.R
b61b20bbed7ac1eaa28b667962b9c26e *tests/testthat/test-ifcb_summarize_class_counts.R
f06bb4cf746e5b93066b7391454a2d57 *tests/testthat/test-ifcb_summarize_png_counts.R
555e66196359b82a183de2f1544722ac *tests/testthat/test-ifcb_summarize_png_metadata.R
bc082dd6ef450cc47c08daa90c7aa482 *tests/testthat/test-ifcb_volume_analyzed.R
93eb46371e1cd42224cee565f70d31e8 *tests/testthat/test-ifcb_volume_analyzed_from_adc.R
bc2189ea9a1213ef700520b3375cd41a *tests/testthat/test-ifcb_which_basin.R
75487c7397ace6913ab0d2522a030387 *tests/testthat/test-ifcb_zip_images_by_class.R
1c749d8e813d6d144ac933f5607f154f *tests/testthat/test-ifcb_zip_matlab.R
877a2a8f0c2521098a51b5636ae9e147 *tests/testthat/test-ifcb_zip_pngs.R
d80d78a911c44e876a6c6b7326bb9a6c *tests/testthat/test-read_class_file.R
31d0042d09516af12358b61dceea9831 *tests/testthat/test_data/test_data.zip
15c102f1c31e06c79a0c1fd6816db88d *vignettes/introduction.Rmd
